CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043893_ssr199 microsatellite CX043893_ssr199:199..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3609 contig Csv1_Contig3609:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRA3 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus agalactiae serotype III GN=rsmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 71/230 (30.87%), Postives = 121/230 (52.61%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVS 780
            D   T   L   G   +KS GQ+++ ++ I  ++   A + +G  V+EIGPG G+LT  L    A V+A E D  ++ ++ +  A  D ++V+ +D +K  +++ + +     K+     KVVAN+P+ I+T ++  L+     F+E V+++Q E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P V+   + FF  VS
Sbjct:    5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILMHLIEGKIPFAEFVVMMQREVADR-ISAMPNTKAYGSLSIAVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVRR---DQPVVSVQDEDFFFRVS 226          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LACAC (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus acidophilus GN=rsmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 74/223 (33.18%), Postives = 118/223 (52.91%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF-------ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +K+LGQ+++++ +    +  AA +Q GD V+EIGPG GSLT  LL AGA V A E D  +  ++           +  D+ K+L +D +K   ++ +   F+ ++      KVVAN+P+ I+T +I  L      FS + L++Q+E A RL E      EY P+ I V      +   +V  T+F P+PKVD++VV   L    + P + + K F  +V   F
Sbjct:   25 KKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQP----IKVVANLPYYITTPIIFALSESDLHFSSLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVKIALEVKSTSFMPRPKVDSSVVV--LTPLQERPKIENRKHFIWVVKMCF 240          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRA1 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus agalactiae serotype Ia GN=rsmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24
Identity = 70/230 (30.43%), Postives = 121/230 (52.61%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVS 780
            D   T   L   G   +KS GQ+++ ++ I  ++   A + +G  V+EIGPG G+LT  L    A V+A E D  ++ ++ +  A  D ++V+ +D +K  +++ + +     K+     KVVAN+P+ I+T ++  L+     F+E V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+ ++    +   D P V+   + FF  VS
Sbjct:    5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYYMTAKVSFIVPRTVFVPAPNVDSVILKMVRR---DQPVVSVQDEDFFFRVS 226          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LACJO (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus johnsonii GN=rsmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24
Identity = 76/223 (34.08%), Postives = 116/223 (52.02%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +K+LGQ+++++      +  AA +Q GD V+EIGPG GSLT  LL AGA VLA E DQ +  ++              D+ K++ +D +K +         +  KS     K+VAN+P+ I+T +I  L+     FS + L++Q+E A RLV    +T EY P++I V          +V  T+F P+PKVD+AVV   L    + P +     F  +V   F
Sbjct:   25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYYITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCF 240          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_CHLAB (Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila abortus GN=rsmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24
Identity = 75/219 (34.25%), Postives = 122/219 (55.71%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            P+K L Q+++++  I  ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD  +         ++ QL +  E    C      L    + +   G  +VVAN+P++I+T ++++L L   + +  V +++Q+E A R+  +P     EY  + IF+ F+ +  Y FKV    F P+P+V +AVV   +K+         TK FFS+  +AF
Sbjct:   20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDSMLE-------ETLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITTPLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVSPGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAF 224          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BACHD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus halodurans GN=rsmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24
Identity = 64/216 (29.63%), Postives = 117/216 (54.17%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +KSLGQ+++++  +   +   A++      +EIGPG G+LT  L      V+A E DQ ++ ++RE  A  + + V+ ED +K  ++  + + FE  +       VVAN+P+ ++T ++ +LL        +V+++Q E A R+      T EY  ++I   +Y+  E   KVP+T F PQP VD+AV+   +++      V   +  F++V ++F
Sbjct:   23 KKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLARQAKRVVAFEIDQRLIPVLRETLAPYENVTVINEDVLKADVKQVIATTFEEGQD----LMVVANLPYYVTTPILMKLLEAKLPVRGIVVMIQAEVADRIAAKP-GTKEYGSLSIAAQYYATAELAVKVPKTVFVPQPNVDSAVLRLTIREKPPV-TVADEEWLFAIVRASF 232          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STACT (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus carnosus (strain TM300) GN=rsmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23
Identity = 70/227 (30.84%), Postives = 116/227 (51.10%), Query Frame = 1
Query:  112 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +AL  K +F  +KSLGQ+++++  I  ++  A+ + E   V+E+GPG GSLT  L      V+A E DQ ++ ++ +  +  D + V+ ED +K  +    +   +   S      VVAN+P+ I+T ++  L+         V+++Q+E   RL    + T  Y  ++I   +Y+E      VP+T F P P VD+ VV    +QA    AV     FF M  +AF
Sbjct:   13 RALLDKYQFDFKKSLGQNFLIDVNIIQKIIDASNIDERTGVIEVGPGMGSLTEQLAKHAKKVVAFEIDQRLIPVLEDTLSDYDNVTVINEDILKADV----VEAVQTHLSDCDKIMVVANLPYYITTPILLNLMSKSLPIDGYVVMMQKEVGERL-NAEIGTKAYGSLSIVAQYYTETSKVLTVPKTVFMPPPNVDSIVVKLMKRQA-PIVAVDDEDQFFKMTKAAF 233          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_GEOTN (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23
Identity = 66/216 (30.56%), Postives = 119/216 (55.09%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +KSLGQ++++++ I  ++  AA +      +EIGPG G+LT  L      V+A E D  ++ ++ +  ++ D ++++ +D +K  + + +   F    +      VVAN+P+ ++T +I +LL        +V+++Q+E A RL      T +Y  + I V +Y+E E    VPRT F PQP VD+AV+    K++    AV   + FF +V ++F
Sbjct:   23 KKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARRAKKVVAFEIDSRLLPILADTLSAYDNVRIIHQDVLKADLHAVIAEEF----AEVSDRMVVANLPYYVTTPIIMKLLTERLPIRGMVVMMQKEVADRLAAKP-GTKDYGSLTIAVQYYTEAEVVMTVPRTVFMPQPNVDSAVIRL-TKRSHPPVAVEDEEVFFQVVRASF 232          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_CHLMU (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia muridarum GN=rsmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23
Identity = 75/240 (31.25%), Postives = 137/240 (57.08%), Query Frame = 1
Query:   76 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP-AVTSTKSFFSMVSSAF 789
            ARS  +   + +K++N + +   K+L Q+++++  I  ++ A A VQ GD VLEIGPG G+L+ VL++ GA V+A+EKD            S+ QL +  E    C  +  + SL +  K   G  ++VAN+P++I+T ++ K  L   + +  V +++Q+E A R +  +    +Y  + +F+ F+++ +Y FKV    F+P+P V +AVV  ++ +  D+P + +    FF++  +AF
Sbjct:    2 ARSSIEQLTSFLKSVNGRAK---KALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFGALSEVLVSQGANVIALEKDPMFE-------ESLSQLPIDIEITDAC--KYPLASLDD--KGWKGKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVA-RRITANPGDKDYSSLTVFLRFFADVQYAFKVSPNCFYPKPSVSSAVVHMRVHE--DFPLSGSEIDEFFALTRAAF 224          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LACPL (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus plantarum GN=rsmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.815e-23
Identity = 71/226 (31.42%), Postives = 116/226 (51.33%), Query Frame = 1
Query:  118 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAF 789
            +++ G   +KSLGQ+++ +  +   + A A +   D V+EIGPG G+LT  L  A   VLA E D  ++ ++ E  A  D + V+ +D +K  + + +    +  +      K+VAN+P+ I+T ++  +L     F  +V+++Q+E A RL  EP   T  Y  + I V +    E    VPRT F P P VD+A+V    L   T  P      +FF +V + F
Sbjct:   18 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVLAFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPYYITTPILMNILAGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMAMVVPRTVFVPSPNVDSAIVKLTALPLRTHVP--FDEAAFFKVVKAGF 235          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_STRA36.238e-2430.87Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACAC6.238e-2433.18Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRA18.147e-2430.43Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACJO8.147e-2434.08Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLAB8.147e-2434.25Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACHD8.147e-2429.63Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STACT1.064e-2330.84Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_GEOTN1.064e-2330.56Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLMU1.064e-2331.25Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACPL1.815e-2331.42Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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