CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRA3 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus agalactiae serotype III GN=rsmA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24 Identity = 71/230 (30.87%), Postives = 121/230 (52.61%), Query Frame = 1 Query: 94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVS 780 D T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D ++ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++ L+ F+E V+++Q E A R + T Y ++I V +Y + F VPRT F P P VD+A++ + D P V+ + FF VS Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILMHLIEGKIPFAEFVVMMQREVADR-ISAMPNTKAYGSLSIAVQYYMTAKVSFIVPRTVFVPAPNVDSAILKMVRR---DQPVVSVQDEDFFFRVS 226
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LACAC (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus acidophilus GN=rsmA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24 Identity = 74/223 (33.18%), Postives = 118/223 (52.91%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF-------ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +K+LGQ+++++ + + AA +Q GD V+EIGPG GSLT LL AGA V A E D + ++ + D+ K+L +D +K ++ + F+ ++ KVVAN+P+ I+T +I L FS + L++Q+E A RL E EY P+ I V + +V T+F P+PKVD++VV L + P + + K F +V F Sbjct: 25 KKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQP----IKVVANLPYYITTPIIFALSESDLHFSSLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVKIALEVKSTSFMPRPKVDSSVVV--LTPLQERPKIENRKHFIWVVKMCF 240
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRA1 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus agalactiae serotype Ia GN=rsmA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24 Identity = 70/230 (30.43%), Postives = 121/230 (52.61%), Query Frame = 1 Query: 94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVS 780 D T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D ++ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+ ++ + D P V+ + FF VS Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYYMTAKVSFIVPRTVFVPAPNVDSVILKMVRR---DQPVVSVQDEDFFFRVS 226
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LACJO (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus johnsonii GN=rsmA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24 Identity = 76/223 (34.08%), Postives = 116/223 (52.02%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ + ++ D+ K++ +D +K + + KS K+VAN+P+ I+T +I L+ FS + L++Q+E A RLV +T EY P++I V +V T+F P+PKVD+AVV L + P + F +V F Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDLPEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYYITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEVKSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCF 240
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_CHLAB (Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila abortus GN=rsmA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24 Identity = 75/219 (34.25%), Postives = 122/219 (55.71%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD + ++ QL + E C L + + G +VVAN+P++I+T ++++L L + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV F P+P+V +AVV +K+ TK FFS+ +AF Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDSMLE-------ETLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITTPLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVSPGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAF 224
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BACHD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus halodurans GN=rsmA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24 Identity = 64/216 (29.63%), Postives = 117/216 (54.17%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +KSLGQ+++++ + + A++ +EIGPG G+LT L V+A E DQ ++ ++RE A + + V+ ED +K ++ + + FE + VVAN+P+ ++T ++ +LL +V+++Q E A R+ T EY ++I +Y+ E KVP+T F PQP VD+AV+ +++ V + F++V ++F Sbjct: 23 KKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLARQAKRVVAFEIDQRLIPVLRETLAPYENVTVINEDVLKADVKQVIATTFEEGQD----LMVVANLPYYVTTPILMKLLEAKLPVRGIVVMIQAEVADRIAAKP-GTKEYGSLSIAAQYYATAELAVKVPKTVFVPQPNVDSAVLRLTIREKPPV-TVADEEWLFAIVRASF 232
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STACT (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus carnosus (strain TM300) GN=rsmA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23 Identity = 70/227 (30.84%), Postives = 116/227 (51.10%), Query Frame = 1 Query: 112 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +AL K +F +KSLGQ+++++ I ++ A+ + E V+E+GPG GSLT L V+A E DQ ++ ++ + + D + V+ ED +K + + + S VVAN+P+ I+T ++ L+ V+++Q+E RL + T Y ++I +Y+E VP+T F P P VD+ VV +QA AV FF M +AF Sbjct: 13 RALLDKYQFDFKKSLGQNFLIDVNIIQKIIDASNIDERTGVIEVGPGMGSLTEQLAKHAKKVVAFEIDQRLIPVLEDTLSDYDNVTVINEDILKADV----VEAVQTHLSDCDKIMVVANLPYYITTPILLNLMSKSLPIDGYVVMMQKEVGERL-NAEIGTKAYGSLSIVAQYYTETSKVLTVPKTVFMPPPNVDSIVVKLMKRQA-PIVAVDDEDQFFKMTKAAF 233
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_GEOTN (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23 Identity = 66/216 (30.56%), Postives = 119/216 (55.09%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +KSLGQ++++++ I ++ AA + +EIGPG G+LT L V+A E D ++ ++ + ++ D ++++ +D +K + + + F + VVAN+P+ ++T +I +LL +V+++Q+E A RL T +Y + I V +Y+E E VPRT F PQP VD+AV+ K++ AV + FF +V ++F Sbjct: 23 KKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARRAKKVVAFEIDSRLLPILADTLSAYDNVRIIHQDVLKADLHAVIAEEF----AEVSDRMVVANLPYYVTTPIIMKLLTERLPIRGMVVMMQKEVADRLAAKP-GTKDYGSLTIAVQYYTEAEVVMTVPRTVFMPQPNVDSAVIRL-TKRSHPPVAVEDEEVFFQVVRASF 232
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_CHLMU (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia muridarum GN=rsmA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.064e-23 Identity = 75/240 (31.25%), Postives = 137/240 (57.08%), Query Frame = 1 Query: 76 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP-AVTSTKSFFSMVSSAF 789 ARS + + +K++N + + K+L Q+++++ I ++ A A VQ GD VLEIGPG G+L+ VL++ GA V+A+EKD S+ QL + E C + + SL + K G ++VAN+P++I+T ++ K L + + V +++Q+E A R + + +Y + +F+ F+++ +Y FKV F+P+P V +AVV ++ + D+P + + FF++ +AF Sbjct: 2 ARSSIEQLTSFLKSVNGRAK---KALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFGALSEVLVSQGANVIALEKDPMFE-------ESLSQLPIDIEITDAC--KYPLASLDD--KGWKGKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVA-RRITANPGDKDYSSLTVFLRFFADVQYAFKVSPNCFYPKPSVSSAVVHMRVHE--DFPLSGSEIDEFFALTRAAF 224
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LACPL (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus plantarum GN=rsmA PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.815e-23 Identity = 71/226 (31.42%), Postives = 116/226 (51.33%), Query Frame = 1 Query: 118 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAF 789 +++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VLA E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+ I+T ++ +L F +V+++Q+E A RL EP T Y + I V + E VPRT F P P VD+A+V L T P +FF +V + F Sbjct: 18 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVLAFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPYYITTPILMNILAGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMAMVVPRTVFVPSPNVDSAIVKLTALPLRTHVP--FDEAAFFKVVKAGF 235 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |