CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043893_ssr199 microsatellite CX043893_ssr199:199..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3609 contig Csv1_Contig3609:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAAN (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain N315) GN=rsmA PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAAM (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rsmA PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAAE (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain Newman) GN=rsmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGIGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAAC (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain COL) GN=rsmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAAB (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rsmA PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAA9 (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain JH9) GN=rsmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAA8 (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain NCTC 8325) GN=rsmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAA3 (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain USA300) GN=rsmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAA2 (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain JH1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
[Close]
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STAA1 (Ribosomal RNA small subunit methyltransferase A OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rsmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAF 789
            +KSLGQ+++++  I + +  A+ +     V+EIGPG GSLT  L      VLA E DQ ++ ++ +  +  D + V+ ED +K +I+  +    E          VVAN+P+ I+T ++  L+         V+++Q+E   RL    + +  Y  ++I V +Y+E      VP++ F P P VD+ VV  KL Q T+ P VT  + ++FF +  +AF
Sbjct:   25 KKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPGMGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAV----ENHLQDCEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERL-NAEVGSKAYGSLSIVVQYYTETSKVLTVPKSVFMPPPNVDSIVV--KLMQRTE-PLVTVDNEEAFFKLAKAAF 234
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_STAAN6.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAAM6.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAAE6.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAAC6.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAAB6.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAA96.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAA86.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAA36.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAA26.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STAA16.897e-2331.65Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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