CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CYAA5 (Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp. (strain ATCC 51142) GN=rsmA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17
Identity = 54/169 (31.95%), Postives = 97/169 (57.40%), Query Frame = -2
Query:  378 KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            KVVANIP+NI++ ++ +LL     P    +  +VLL+Q+E A R++     +  Y  ++I + + ++  Y   VP+ +F+P PKVD+AV+TF+ +   +  + T+ K   ++++  F+ +RKMLR +LQ L     + + L ++ L    R E L L+ ++ L N   Q
Sbjct:  105 KVVANIPYNITSPILDKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYP-GSKNYGALSIKMQYLADCNYICDVPKKSFYPPPKVDSAVITFRPRSLLN--SATNPKYLETLINLGFSSRRKMLRNNLQSLIDRDLLTEFLTEIDLNEQVRAENLDLNQWIALSNYFSQ 270          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLMU (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia muridarum GN=rsmA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17
Identity = 49/167 (29.34%), Postives = 100/167 (59.88%), Query Frame = -2
Query:  384 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878
            G  ++VAN+P++I+T ++ K  L   + +  V +++Q+E A R+   +    +Y  + +F+ F+++ +Y FKV    F+P+P V +AVV  ++ +  D+P   S    FF++  +AF  +RK+L  SL++L    ++ + L  +G    +RPE ++L++++K+  L+
Sbjct:  111 GKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVARRITA-NPGDKDYSSLTVFLRFFADVQYAFKVSPNCFYPKPSVSSAVVHMRVHE--DFPLSGSEIDEFFALTRAAFGQRRKLLANSLKNLYPKDKVFQVLEHLGFSEKTRPETISLEEYLKIFRLL 274          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ACIAD (Ribosomal RNA small subunit methyltransferase A OS=Acinetobacter sp. (strain ADP1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.302e-17
Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = -2
Query:  381 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 869
            +VV N+P+NIST ++  LL  GD   ++  +LQ+E   R+  EP+  T EY  +++ + ++ +P + F+VP   F P PKV +AV  F+L    + P V    K+   +V   F  +RK LR SL+ +      +KA    G+   +RPE LTL  FV L + +V
Sbjct:  117 RVVGNLPYNISTPLLFHLLEFGDKVKDMHFMLQKEVVDRITAEPN--TKEYGRLSVMIQYFCQPTFLFEVPAGAFNPPPKVTSAV--FRLVPYKEKPIVAKDEKALSRLVGHVFTQRRKTLRNSLKGMLADDAFDKA----GIDPMARPETLTLAQFVALSDQMV 273          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MYCMS (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma mycoides subsp. mycoides SC GN=rsmA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 45/162 (27.78%), Postives = 92/162 (56.79%), Query Frame = -2
Query:  384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866
            +++N P+ I+++++ + L + D+ ++ V +LQ+E ALR+   +   + Y  ++I   FYS+  ++F V +  F+P PKVD+A+++           +   K F   V   FN KRK +  +L ++  +  +  + L  + + +  RPE+L +D+++KL NL+
Sbjct:  102 IISNTPYYITSEILFKTLQISDLLTKAVFMLQKEVALRICS-NKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIPKVDSAIISLTFNDIYK-KQINDDKKFIEFVRILFNNKRKTILNNLNNIIQNKNKALEYLNTLNISSNLRPEQLDIDEYIKLFNLV 261          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ENTFA (Ribosomal RNA small subunit methyltransferase A OS=Enterococcus faecalis GN=rsmA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 53/167 (31.74%), Postives = 93/167 (55.69%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            KVVAN+P+ I+T ++   L      +E+V+++Q+E A R+      T  Y  ++I V ++ E    F VP+T F PQP VD+A++    ++AT    VT+ K FF +  ++F  +RK L  +L H       T   ++++L +  +  + R E L+L++F +L N +
Sbjct:  125 KVVANLPYYITTPIMMHFLESSLDVAEMVVMMQKEVADRIAAKP-GTKAYGSLSIAVQYFMEASVAFIVPKTVFVPQPNVDSAIIKL-TRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNAL 289          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ANASP (Ribosomal RNA small subunit methyltransferase A OS=Anabaena sp. (strain PCC 7120) GN=rsmA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.127e-17
Identity = 58/167 (34.73%), Postives = 95/167 (56.89%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            KVVANIP+NI+  +I++LL     P  + F  +VLL+Q+E A RL   S  +  +  +++ V + ++ E+   VP + F P PKVD+AVV  + +Q  + P V   K   ++V   F  KRKMLR +LQ +     + + L  + +   +R E+++   +VKL NL+
Sbjct:  105 KVVANIPYNITGPIIEKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKS-GSRTFGALSVRVQYLADCEFICDVPASAFHPPPKVDSAVVRLRPRQI-EIP-VNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQLLEQLNINPQARAEDISTQQWVKLANLL 268          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACBA (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rsmA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.697e-17
Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = -2
Query:  390 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 869
            K+VAN+P+ I+T ++  +L     F  +V+++Q E A RLV EP   T  Y  +++ + + +  E  F VPRT F PQP VD+A++    ++A         K+ FS V   F  +RK L  +LQ +          IE  L   G+    RPE LTL +F++L N
Sbjct:  126 KLVANLPYYITTPILMGVLQSTVRFEAIVVMMQAEVAERLVAEPG--TKAYGSLSVIMQYRAHVEIAFNVPRTAFIPQPNVDSAIIRLTPREALPVNPY-EDKALFSFVKGCFAHRRKSLWNNLQGIFGKQPEVRERIETVLNQTGISRQLRPERLTLLNFIELTN 288          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_FUSNN (Ribosomal RNA small subunit methyltransferase A OS=Fusobacterium nucleatum subsp. nucleatum GN=rsmA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 51/159 (32.08%), Postives = 87/159 (54.72%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVANIP+ I++ +I +++   D+  E  +++Q+E   R+   S +  E   + + V +Y E EY F +PR  F P P VD+A ++ K  +   Y    S   FF  V +AF+ KRK +  +L  L  S + I++ L  + +    R E +++D F++L
Sbjct:  101 KVVANIPYYITSPIINKIIENKDLIDEAYIMVQKEVGERICAKSGK--ERGILTLAVEYYGESEYLFTIPREFFNPIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEILNQIEISENERAENISIDKFIEL 257          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOBJ (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rsmA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 57/168 (33.93%), Postives = 98/168 (58.33%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            K+VAN+P+ ++T +I +LL     F  + +++Q+E A R+  EP+ +  EY  + + V +Y   +   KV   +F P+PKVD+ V+  KL + ++    V S K FF++V S+FN +RK L  SL+ L  + E +E A    G+ +  R E L++++F KL + I  +
Sbjct:  111 KLVANLPYYVTTPIISRLLTEKCNFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNINKESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYDI 274          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACAC (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus acidophilus GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16
Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-TSLEIEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T +I  L      FS + L++Q+E A RL E      EY P+ I V      +   +V  T+F P+PKVD++VV   L    + P + + K F  +V   F+ +RK L  +L+ L   + E E  +  +G+    RPE+LT+D F+++
Sbjct:  132 KVVANLPYYITTPIIFALSESDLHFSSLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVKIALEVKSTSFMPRPKVDSSVVV--LTPLQERPKIENRKHFIWVVKMCFSQRRKTLNNNLKALIPNAKEREALISKLGVDPRVRPEDLTIDQFIEI 287          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_CYAA51.762e-1731.95Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLMU1.762e-1729.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACIAD2.302e-1735.15Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MYCMS3.006e-1727.78Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ENTFA3.006e-1731.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ANASP5.127e-1734.73Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACBA6.697e-1734.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_FUSNN1.142e-1632.08Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOBJ1.492e-1633.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACAC1.948e-1634.59Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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