CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CYAA5 (Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp. (strain ATCC 51142) GN=rsmA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17 Identity = 54/169 (31.95%), Postives = 97/169 (57.40%), Query Frame = -2 Query: 378 KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869 KVVANIP+NI++ ++ +LL P + +VLL+Q+E A R++ + Y ++I + + ++ Y VP+ +F+P PKVD+AV+TF+ + + + T+ K ++++ F+ +RKMLR +LQ L + + L ++ L R E L L+ ++ L N Q Sbjct: 105 KVVANIPYNITSPILDKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYP-GSKNYGALSIKMQYLADCNYICDVPKKSFYPPPKVDSAVITFRPRSLLN--SATNPKYLETLINLGFSSRRKMLRNNLQSLIDRDLLTEFLTEIDLNEQVRAENLDLNQWIALSNYFSQ 270
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLMU (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia muridarum GN=rsmA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17 Identity = 49/167 (29.34%), Postives = 100/167 (59.88%), Query Frame = -2 Query: 384 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878 G ++VAN+P++I+T ++ K L + + V +++Q+E A R+ + +Y + +F+ F+++ +Y FKV F+P+P V +AVV ++ + D+P S FF++ +AF +RK+L SL++L ++ + L +G +RPE ++L++++K+ L+ Sbjct: 111 GKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVARRITA-NPGDKDYSSLTVFLRFFADVQYAFKVSPNCFYPKPSVSSAVVHMRVHE--DFPLSGSEIDEFFALTRAAFGQRRKLLANSLKNLYPKDKVFQVLEHLGFSEKTRPETISLEEYLKIFRLL 274
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ACIAD (Ribosomal RNA small subunit methyltransferase A OS=Acinetobacter sp. (strain ADP1) GN=rsmA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.302e-17 Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = -2 Query: 381 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 869 +VV N+P+NIST ++ LL GD ++ +LQ+E R+ EP+ T EY +++ + ++ +P + F+VP F P PKV +AV F+L + P V K+ +V F +RK LR SL+ + +KA G+ +RPE LTL FV L + +V Sbjct: 117 RVVGNLPYNISTPLLFHLLEFGDKVKDMHFMLQKEVVDRITAEPN--TKEYGRLSVMIQYFCQPTFLFEVPAGAFNPPPKVTSAV--FRLVPYKEKPIVAKDEKALSRLVGHVFTQRRKTLRNSLKGMLADDAFDKA----GIDPMARPETLTLAQFVALSDQMV 273
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MYCMS (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma mycoides subsp. mycoides SC GN=rsmA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17 Identity = 45/162 (27.78%), Postives = 92/162 (56.79%), Query Frame = -2 Query: 384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866 +++N P+ I+++++ + L + D+ ++ V +LQ+E ALR+ + + Y ++I FYS+ ++F V + F+P PKVD+A+++ + K F V FN KRK + +L ++ + + + L + + + RPE+L +D+++KL NL+ Sbjct: 102 IISNTPYYITSEILFKTLQISDLLTKAVFMLQKEVALRICS-NKNENNYNNLSIACQFYSQRNFEFVVNKKMFYPIPKVDSAIISLTFNDIYK-KQINDDKKFIEFVRILFNNKRKTILNNLNNIIQNKNKALEYLNTLNISSNLRPEQLDIDEYIKLFNLV 261
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ENTFA (Ribosomal RNA small subunit methyltransferase A OS=Enterococcus faecalis GN=rsmA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17 Identity = 53/167 (31.74%), Postives = 93/167 (55.69%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 KVVAN+P+ I+T ++ L +E+V+++Q+E A R+ T Y ++I V ++ E F VP+T F PQP VD+A++ ++AT VT+ K FF + ++F +RK L +L H T ++++L + + + R E L+L++F +L N + Sbjct: 125 KVVANLPYYITTPIMMHFLESSLDVAEMVVMMQKEVADRIAAKP-GTKAYGSLSIAVQYFMEASVAFIVPKTVFVPQPNVDSAIIKL-TRRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNAL 289
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ANASP (Ribosomal RNA small subunit methyltransferase A OS=Anabaena sp. (strain PCC 7120) GN=rsmA PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.127e-17 Identity = 58/167 (34.73%), Postives = 95/167 (56.89%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 KVVANIP+NI+ +I++LL P + F +VLL+Q+E A RL S + + +++ V + ++ E+ VP + F P PKVD+AVV + +Q + P V K ++V F KRKMLR +LQ + + + L + + +R E+++ +VKL NL+ Sbjct: 105 KVVANIPYNITGPIIEKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKS-GSRTFGALSVRVQYLADCEFICDVPASAFHPPPKVDSAVVRLRPRQI-EIP-VNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQLLEQLNINPQARAEDISTQQWVKLANLL 268
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACBA (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rsmA PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.697e-17 Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = -2 Query: 390 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 869 K+VAN+P+ I+T ++ +L F +V+++Q E A RLV EP T Y +++ + + + E F VPRT F PQP VD+A++ ++A K+ FS V F +RK L +LQ + IE L G+ RPE LTL +F++L N Sbjct: 126 KLVANLPYYITTPILMGVLQSTVRFEAIVVMMQAEVAERLVAEPG--TKAYGSLSVIMQYRAHVEIAFNVPRTAFIPQPNVDSAIIRLTPREALPVNPY-EDKALFSFVKGCFAHRRKSLWNNLQGIFGKQPEVRERIETVLNQTGISRQLRPERLTLLNFIELTN 288
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_FUSNN (Ribosomal RNA small subunit methyltransferase A OS=Fusobacterium nucleatum subsp. nucleatum GN=rsmA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16 Identity = 51/159 (32.08%), Postives = 87/159 (54.72%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVANIP+ I++ +I +++ D+ E +++Q+E R+ S + E + + V +Y E EY F +PR F P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++ L + + R E +++D F++L Sbjct: 101 KVVANIPYYITSPIINKIIENKDLIDEAYIMVQKEVGERICAKSGK--ERGILTLAVEYYGESEYLFTIPREFFNPIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKEILNQIEISENERAENISIDKFIEL 257
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOBJ (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rsmA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16 Identity = 57/168 (33.93%), Postives = 98/168 (58.33%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 K+VAN+P+ ++T +I +LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L + E +E A G+ + R E L++++F KL + I + Sbjct: 111 KLVANLPYYVTTPIISRLLTEKCNFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNINKESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYDI 274
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACAC (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus acidophilus GN=rsmA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16 Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-TSLEIEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T +I L FS + L++Q+E A RL E EY P+ I V + +V T+F P+PKVD++VV L + P + + K F +V F+ +RK L +L+ L + E E + +G+ RPE+LT+D F+++ Sbjct: 132 KVVANLPYYITTPIIFALSESDLHFSSLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVKIALEVKSTSFMPRPKVDSSVVV--LTPLQERPKIENRKHFIWVVKMCFSQRRKTLNNNLKALIPNAKEREALISKLGVDPRVRPEDLTIDQFIEI 287 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |