CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLTR (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia trachomatis GN=rsmA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16 Identity = 47/169 (27.81%), Postives = 99/169 (58.58%), Query Frame = -2 Query: 375 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878 G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +Y + +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF +RK+L SL++L ++ + L +G +RPE + L++++K+ +L+ + Sbjct: 111 GKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKP-GDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLTB (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rsmA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16 Identity = 47/169 (27.81%), Postives = 99/169 (58.58%), Query Frame = -2 Query: 375 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878 G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +Y + +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF +RK+L SL++L ++ + L +G +RPE + L++++K+ +L+ + Sbjct: 111 GKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKP-GDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLTA (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rsmA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16 Identity = 47/169 (27.81%), Postives = 99/169 (58.58%), Query Frame = -2 Query: 375 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878 G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +Y + +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF +RK+L SL++L ++ + L +G +RPE + L++++K+ +L+ + Sbjct: 111 GKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKP-GDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLT2 (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rsmA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16 Identity = 47/169 (27.81%), Postives = 99/169 (58.58%), Query Frame = -2 Query: 375 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878 G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +Y + +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF +RK+L SL++L ++ + L +G +RPE + L++++K+ +L+ + Sbjct: 111 GKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKP-GDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACDB (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rsmA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16 Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 KVVAN+P+ I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L E EK L D+ L RPE+L + DF+++ I ++ Sbjct: 132 KVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAEM 294
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACDA (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rsmA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16 Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 KVVAN+P+ I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L E EK L D+ L RPE+L + DF+++ I ++ Sbjct: 132 KVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAEM 294
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOB6 (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rsmA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16 Identity = 57/168 (33.93%), Postives = 98/168 (58.33%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 K+VAN+P+ ++T +I +LL F + +++Q+E A R+ EP+ + EY + + V +Y + + KV F P+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L + E +E A G+ + R E L++++F KL + I + Sbjct: 111 KLVANLPYYVTTPIISRLLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCDTKIIRKVSPNCFIPRPKVDSIVI--KLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNINKESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYDI 274
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACP2 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus pumilus (strain SAFR-032) GN=rsmA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16 Identity = 55/170 (32.35%), Postives = 96/170 (56.47%), Query Frame = -2 Query: 384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL--------QHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866 VVAN+P+ ++T +I +LL +V++LQ+E A R+ PS + EY ++I V +Y+E + VP+T F PQP VD+AV+ +++ T +V + + FF ++ ++F +RK L +L QH IE+AL + R E L++++F +L N++ Sbjct: 124 VVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAIPS--SKEYNSLSIAVQYYTEAKTVMVVPKTVFVPQPNVDSAVIKLTVRE-TPAVSVENDEFFFQLIRASFGQRRKTLMNNLMNNLPDGKQHKAI---IEEALQTADIDGKRRGESLSIEEFARLSNVL 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ALCBS (Ribosomal RNA small subunit methyltransferase A OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rsmA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16 Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = -2 Query: 387 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNL 869 +V+ N+P+NIST +I LL D S++ +LQ+E RL S T ++ ++I V ++ + +Y F VP F P P+VD+AVV + +PA +V+ AF +RK +R L+ ++ + + VG+ A RP++L++ D+V L N+ Sbjct: 102 RVIGNLPYNISTPLIFHLLAQADAISDMTFMLQKEVVERLT-ASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPPPRVDSAVVRLIPHDSPPHPA-DDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFQA----VGIDAGLRPDQLSVADYVALANI 256
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOBM (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16 Identity = 58/168 (34.52%), Postives = 95/168 (56.55%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 K+VAN+P+ ++T +I +LL F + +++Q+E A R+ EP+ + EY + + V +Y E KV F P+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E A G+ R E L++++F KL + I + Sbjct: 111 KLVANLPYYVTTPIISRLLKEKCDFKSLTIMIQKEVAERIDAEPNCK--EYGSLTVLVQYYCNTEIIRKVSPNCFIPRPKVDSIVI--KLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYDI 274 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |