CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLTR (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia trachomatis GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16
Identity = 47/169 (27.81%), Postives = 99/169 (58.58%), Query Frame = -2
Query:  375 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878
            G  ++VAN+P++I+T ++ K  L     +  V +++Q+E A R+        +Y  + +F++F+++ +Y FKV    F+P+P V +AVV  ++ +     A +  + FF++  +AF  +RK+L  SL++L    ++ + L  +G    +RPE + L++++K+ +L+  +
Sbjct:  111 GKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKP-GDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLTB (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16
Identity = 47/169 (27.81%), Postives = 99/169 (58.58%), Query Frame = -2
Query:  375 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878
            G  ++VAN+P++I+T ++ K  L     +  V +++Q+E A R+        +Y  + +F++F+++ +Y FKV    F+P+P V +AVV  ++ +     A +  + FF++  +AF  +RK+L  SL++L    ++ + L  +G    +RPE + L++++K+ +L+  +
Sbjct:  111 GKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKP-GDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLTA (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16
Identity = 47/169 (27.81%), Postives = 99/169 (58.58%), Query Frame = -2
Query:  375 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878
            G  ++VAN+P++I+T ++ K  L     +  V +++Q+E A R+        +Y  + +F++F+++ +Y FKV    F+P+P V +AVV  ++ +     A +  + FF++  +AF  +RK+L  SL++L    ++ + L  +G    +RPE + L++++K+ +L+  +
Sbjct:  111 GKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKP-GDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CHLT2 (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16
Identity = 47/169 (27.81%), Postives = 99/169 (58.58%), Query Frame = -2
Query:  375 GFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878
            G  ++VAN+P++I+T ++ K  L     +  V +++Q+E A R+        +Y  + +F++F+++ +Y FKV    F+P+P V +AVV  ++ +     A +  + FF++  +AF  +RK+L  SL++L    ++ + L  +G    +RPE + L++++K+ +L+  +
Sbjct:  111 GKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKP-GDKDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACDB (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            KVVAN+P+ I+T +I  LL     F+ + L++Q+E A RL  +P   +  Y P++I V      +   +V   +F PQPKVD+AVV    L++  D   V   K F  +V   F  +RK L  +L+ L    E  EK L D+ L    RPE+L + DF+++   I ++
Sbjct:  132 KVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAEM 294          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACDA (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            KVVAN+P+ I+T +I  LL     F+ + L++Q+E A RL  +P   +  Y P++I V      +   +V   +F PQPKVD+AVV    L++  D   V   K F  +V   F  +RK L  +L+ L    E  EK L D+ L    RPE+L + DF+++   I ++
Sbjct:  132 KVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALEVGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLLPDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAEM 294          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOB6 (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16
Identity = 57/168 (33.93%), Postives = 98/168 (58.33%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            K+VAN+P+ ++T +I +LL     F  + +++Q+E A R+  EP+ +  EY  + + V +Y + +   KV    F P+PKVD+ V+  KL + ++    V S K FF++V S+FN +RK L  SL+ L  + E +E A    G+ +  R E L++++F KL + I  +
Sbjct:  111 KLVANLPYYVTTPIISRLLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCDTKIIRKVSPNCFIPRPKVDSIVI--KLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNINKESMENAFERAGIDSKRRGETLSIEEFGKLSDCIYDI 274          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACP2 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus pumilus (strain SAFR-032) GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16
Identity = 55/170 (32.35%), Postives = 96/170 (56.47%), Query Frame = -2
Query:  384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL--------QHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866
            VVAN+P+ ++T +I +LL        +V++LQ+E A R+   PS  + EY  ++I V +Y+E +    VP+T F PQP VD+AV+   +++ T   +V + + FF ++ ++F  +RK L  +L        QH      IE+AL    +    R E L++++F +L N++
Sbjct:  124 VVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAIPS--SKEYNSLSIAVQYYTEAKTVMVVPKTVFVPQPNVDSAVIKLTVRE-TPAVSVENDEFFFQLIRASFGQRRKTLMNNLMNNLPDGKQHKAI---IEEALQTADIDGKRRGESLSIEEFARLSNVL 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ALCBS (Ribosomal RNA small subunit methyltransferase A OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rsmA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = -2
Query:  387 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNL 869
            +V+ N+P+NIST +I  LL   D  S++  +LQ+E   RL   S  T ++  ++I V ++ + +Y F VP   F P P+VD+AVV      +  +PA         +V+ AF  +RK +R  L+   ++ + +     VG+ A  RP++L++ D+V L N+
Sbjct:  102 RVIGNLPYNISTPLIFHLLAQADAISDMTFMLQKEVVERLT-ASPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSPPPRVDSAVVRLIPHDSPPHPA-DDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFQA----VGIDAGLRPDQLSVADYVALANI 256          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOBM (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 58/168 (34.52%), Postives = 95/168 (56.55%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            K+VAN+P+ ++T +I +LL     F  + +++Q+E A R+  EP+ +  EY  + + V +Y   E   KV    F P+PKVD+ V+  KL + ++    V S K FF++V S+FN +RK L  SL+ L    E +E A    G+    R E L++++F KL + I  +
Sbjct:  111 KLVANLPYYVTTPIISRLLKEKCDFKSLTIMIQKEVAERIDAEPNCK--EYGSLTVLVQYYCNTEIIRKVSPNCFIPRPKVDSIVI--KLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYDI 274          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_CHLTR1.948e-1627.81Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLTB1.948e-1627.81Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLTA1.948e-1627.81Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLT21.948e-1627.81Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACDB2.545e-1635.12Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACDA2.545e-1635.12Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOB62.545e-1633.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACP22.545e-1632.35Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ALCBS2.545e-1632.30Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOBM3.324e-1634.52Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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