CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOBL (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            K+VAN+P+ ++T +I +LL     F  + +++Q+E A R+  EP+ +  EY  + + V +Y   +   KV   +F P+PKVD+ V+  KL + ++    V S K FF++V S+FN +RK L  SL+ L    E +E A    G+    R E L++++F KL + I  +
Sbjct:  111 KLVANLPYYVTTPIISRLLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYDI 274          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOBK (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain Okra / Type B1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            K+VAN+P+ ++T +I +LL     F  + +++Q+E A R+  EP+ +  EY  + + V +Y   +   KV   +F P+PKVD+ V+  KL + ++    V S K FF++V S+FN +RK L  SL+ L    E +E A    G+    R E L++++F KL + I  +
Sbjct:  111 KLVANLPYYVTTPIISRLLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIPKPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYDI 274          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOB1 (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            K+VAN+P+ ++T +I +LL     F  + +++Q+E A R+  EP+ +  EY  + + V +Y   +   KV   +F P+PKVD+ V+  KL + ++    V S K FF++V S+FN +RK L  SL+ L    E +E A    G+    R E L++++F KL + I  +
Sbjct:  111 KLVANLPYYVTTPIISRLLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYDI 274          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRZP (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain P1031) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.341e-16
Identity = 55/163 (33.74%), Postives = 86/163 (52.76%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L++F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPVPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SHEWM (Ribosomal RNA small subunit methyltransferase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16
Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = -2
Query:  381 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 869
            KV  N+P+NIST ++  L    +    +  +LQ+E  LRL   S  T  Y  + +   ++ +     +VP  +F P PKVD+AVV     +   +P          + ++AFN +RK LR +L+H+ +    ++   ++G+ AT RPE++T++ +V + N +V
Sbjct:  108 KVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYHCQVMPVLEVPPGSFTPPPKVDSAVVRLVPYKVKPWPC-KDVDQLRHLTTTAFNMRRKTLRNNLKHMIS----DEEFAELGIDATLRPEQITVEQYVAMANFVV 264          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SACD2 (Ribosomal RNA small subunit methyltransferase A OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16
Identity = 52/162 (32.10%), Postives = 89/162 (54.94%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +VV N+P+NIST +I  LL  G++ +++  +LQ+E  LRL         Y  +++   +  + E  F+VP   F P+PKVD+A+V     +   + A    K    +V +AF  +RK LR +L++L   L++E     + +  T R E L+L+++V L N +
Sbjct:  111 RVVGNLPYNISTPLIFHLLSFGELIADMHFMLQKEVVLRLA-AGPGDKNYGRLSVMTQYVCQVENLFEVPPECFNPRPKVDSAIVRLTPYRTQPFVAAHPDK-LAKLVKTAFAQRRKTLRNNLKNLDEELDLEA----LDIDLTRRAESLSLEEYVNLSNTL 266          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_GEOTN (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16
Identity = 59/170 (34.71%), Postives = 92/170 (54.12%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL--------EIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ ++T +I +LL        +V+++Q+E A RL      T +Y  + I V +Y+E E    VPRT F PQP VD+AV+    K++    AV   + FF +V ++F  +RK L   L +L  +L        +IE+AL  VG+    R E L + +F  L N ++
Sbjct:  124 VVANLPYYVTTPIIMKLLTERLPIRGMVVMMQKEVADRLAAKP-GTKDYGSLTIAVQYYTEAEVVMTVPRTVFMPQPNVDSAVIRL-TKRSHPPVAVEDEEVFFQVVRASFAQRRKTL---LNNLLNNLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNALM 288          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACLD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16
Identity = 57/170 (33.53%), Postives = 95/170 (55.88%), Query Frame = -2
Query:  375 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 866
            VVAN+P+ ++T +I +LL        +V++LQ+E A R+  +PS  + EY  ++I V FY+E +    VP+T F PQP VD+AV+   L++     AV     FF +V ++F  +RK L  +L +          +IE+AL D  +    R E L++++F  L + + +V
Sbjct:  124 VVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEAKTVMNVPKTVFVPQPNVDSAVIRLTLRKEPAV-AVQDAAFFFQVVKASFAQRRKTLFNNLVNNLPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVLSDRLREV 290          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SYNY3 (Ribosomal RNA small subunit methyltransferase A OS=Synechocystis sp. (strain PCC 6803) GN=rsmA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 57/171 (33.33%), Postives = 96/171 (56.14%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT---STKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            KVVANIP+NI++ +++ LL     P    F  +VLL+Q+E A RL  +PS  T  Y  +++ + + +  ++   VP   F P PKVD+AV+     + T YP        +    ++   F  +RKMLR +L+ L    ++   L  + LP+T+R E+L+L+ +++L NL+
Sbjct:  114 KVVANIPYNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPS--TKAYGALSVRMQYLARVDWIVDVPPKAFTPPPKVDSAVI-----RLTPYPVEQLPGDRRLLDQLLCLGFANRRKMLRNNLKGLIAPEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOAB (Ribosomal RNA small subunit methyltransferase A OS=Clostridium acetobutylicum GN=rsmA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 54/164 (32.93%), Postives = 94/164 (57.32%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-CTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I +LL  G  F  + +++Q+E   R+  +PS  T +Y  + + V +Y + +    V  + F PQPKVD+ V+    K       V   K FF+++ SAFN +RK L  +++ L  +S ++EKA    G+ +  R E L++++F KL + I
Sbjct:  114 KLVANLPYYVTTPIISKLLNEGYNFKSLTIMIQKEVGDRIAAKPS--TKDYGALTLLVQYYCDVKVVRVVKPSCFIPQPKVDSLVIRLD-KLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKGLKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSDEI 274          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_CLOBL3.324e-1633.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOBK3.324e-1633.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOB13.324e-1633.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRZP4.341e-1633.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEWM5.669e-1630.06Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SACD25.669e-1632.10Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_GEOTN5.669e-1634.71Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACLD5.669e-1633.53Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SYNY37.404e-1633.33Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOAB7.404e-1632.93Ribosomal RNA small subunit methyltransferase A OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
back to top