CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOBL (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16 Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 K+VAN+P+ ++T +I +LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E A G+ R E L++++F KL + I + Sbjct: 111 KLVANLPYYVTTPIISRLLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYDI 274
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOBK (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain Okra / Type B1) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16 Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 K+VAN+P+ ++T +I +LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E A G+ R E L++++F KL + I + Sbjct: 111 KLVANLPYYVTTPIISRLLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIPKPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYDI 274
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOB1 (Ribosomal RNA small subunit methyltransferase A OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16 Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 K+VAN+P+ ++T +I +LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E A G+ R E L++++F KL + I + Sbjct: 111 KLVANLPYYVTTPIISRLLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIPRPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMENAFERAGIDPKRRGETLSIEEFGKLSDCIYDI 274
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRZP (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain P1031) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.341e-16 Identity = 55/163 (33.74%), Postives = 86/163 (52.76%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L++F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPVPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SHEWM (Ribosomal RNA small subunit methyltransferase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16 Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = -2 Query: 381 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 869 KV N+P+NIST ++ L + + +LQ+E LRL S T Y + + ++ + +VP +F P PKVD+AVV + +P + ++AFN +RK LR +L+H+ + ++ ++G+ AT RPE++T++ +V + N +V Sbjct: 108 KVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYHCQVMPVLEVPPGSFTPPPKVDSAVVRLVPYKVKPWPC-KDVDQLRHLTTTAFNMRRKTLRNNLKHMIS----DEEFAELGIDATLRPEQITVEQYVAMANFVV 264
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SACD2 (Ribosomal RNA small subunit methyltransferase A OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16 Identity = 52/162 (32.10%), Postives = 89/162 (54.94%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +VV N+P+NIST +I LL G++ +++ +LQ+E LRL Y +++ + + E F+VP F P+PKVD+A+V + + A K +V +AF +RK LR +L++L L++E + + T R E L+L+++V L N + Sbjct: 111 RVVGNLPYNISTPLIFHLLSFGELIADMHFMLQKEVVLRLA-AGPGDKNYGRLSVMTQYVCQVENLFEVPPECFNPRPKVDSAIVRLTPYRTQPFVAAHPDK-LAKLVKTAFAQRRKTLRNNLKNLDEELDLEA----LDIDLTRRAESLSLEEYVNLSNTL 266
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_GEOTN (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16 Identity = 59/170 (34.71%), Postives = 92/170 (54.12%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL--------EIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ ++T +I +LL +V+++Q+E A RL T +Y + I V +Y+E E VPRT F PQP VD+AV+ K++ AV + FF +V ++F +RK L L +L +L +IE+AL VG+ R E L + +F L N ++ Sbjct: 124 VVANLPYYVTTPIIMKLLTERLPIRGMVVMMQKEVADRLAAKP-GTKDYGSLTIAVQYYTEAEVVMTVPRTVFMPQPNVDSAVIRL-TKRSHPPVAVEDEEVFFQVVRASFAQRRKTL---LNNLLNNLPDGKEKKEQIERALDAVGIDPRRRGETLDMAEFASLSNALM 288
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACLD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.669e-16 Identity = 57/170 (33.53%), Postives = 95/170 (55.88%), Query Frame = -2 Query: 375 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 866 VVAN+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F PQP VD+AV+ L++ AV FF +V ++F +RK L +L + +IE+AL D + R E L++++F L + + +V Sbjct: 124 VVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEAKTVMNVPKTVFVPQPNVDSAVIRLTLRKEPAV-AVQDAAFFFQVVKASFAQRRKTLFNNLVNNLPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVLSDRLREV 290
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SYNY3 (Ribosomal RNA small subunit methyltransferase A OS=Synechocystis sp. (strain PCC 6803) GN=rsmA PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16 Identity = 57/171 (33.33%), Postives = 96/171 (56.14%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT---STKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 KVVANIP+NI++ +++ LL P F +VLL+Q+E A RL +PS T Y +++ + + + ++ VP F P PKVD+AV+ + T YP + ++ F +RKMLR +L+ L ++ L + LP+T+R E+L+L+ +++L NL+ Sbjct: 114 KVVANIPYNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPS--TKAYGALSVRMQYLARVDWIVDVPPKAFTPPPKVDSAVI-----RLTPYPVEQLPGDRRLLDQLLCLGFANRRKMLRNNLKGLIAPEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOAB (Ribosomal RNA small subunit methyltransferase A OS=Clostridium acetobutylicum GN=rsmA PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16 Identity = 54/164 (32.93%), Postives = 94/164 (57.32%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-CTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ ++T +I +LL G F + +++Q+E R+ +PS T +Y + + V +Y + + V + F PQPKVD+ V+ K V K FF+++ SAFN +RK L +++ L +S ++EKA G+ + R E L++++F KL + I Sbjct: 114 KLVANLPYYVTTPIISKLLNEGYNFKSLTIMIQKEVGDRIAAKPS--TKDYGALTLLVQYYCDVKVVRVVKPSCFIPQPKVDSLVIRLD-KLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKGLKLSSEDLEKAFEAAGIDSKRRGETLSIEEFGKLSDEI 274 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |