CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_VIBC3 (Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = -2 Query: 390 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 869 +V N+P+NIST ++ L ++ +LQ+E RL T Y + + +Y + +VP + F P PKVD+AVV + +PA TS + +V FN +RK +R + L + L +G+ RPE LTL FV L N Sbjct: 108 RVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGP-GTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPA-TSLEWLDRVVREGFNQRRKTVRNCYKGLAE----PETLETLGINPGMRPENLTLAQFVALAN 261
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PELLD (Ribosomal RNA small subunit methyltransferase A OS=Pelodictyon luteolum (strain DSM 273) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 52/166 (31.33%), Postives = 87/166 (52.41%), Query Frame = -2 Query: 384 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878 G +V+ NIP++I+T ++ +LL + L++Q E A RLV PS T EY + + + + + Y FKV R F PQP VD+AV++ K+ AV ++F V +AF+ +RK L +L+ +++ G + L R E L+++ L L+ Sbjct: 103 GPLRVLGNIPYSITTPILFKLLENRRSITSATLMMQHEVAARLVATPS--TKEYGILAVQLQTFCDVRYLFKVGRKVFRPQPNVDSAVISMVPKKNV---AVEDAQAFSRFVRTAFHQRRKTLYNNLKDAYMLQAVDE--GTLKL----RAEALSIEKLADLFKLV 257
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACRJ (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus reuteri (strain JCM 1112) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 44/169 (26.04%), Postives = 81/169 (47.93%), Query Frame = -2 Query: 378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-----CTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869 KVVAN+P+ I++ ++ LL ++ + +++Q+E A RL T +Y + + + + + + F V R F P P VD+A+V + + F + F +RK L +LQ + ++ L + + RPE+LTL+ F++L N + Q Sbjct: 126 KVVANLPYYITSPILMNLLASPVEWATICVMMQKEVAQRLTAKP-GTKQYGALTLAIEYQMQAKIAFDVSRKVFVPAPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQSVIGKDPAAKEKMTAVLNQLDISPQIRPEKLTLEQFIELANALHQ 293
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACRD (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus reuteri (strain DSM 20016) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 44/169 (26.04%), Postives = 81/169 (47.93%), Query Frame = -2 Query: 378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-----CTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869 KVVAN+P+ I++ ++ LL ++ + +++Q+E A RL T +Y + + + + + + F V R F P P VD+A+V + + F + F +RK L +LQ + ++ L + + RPE+LTL+ F++L N + Q Sbjct: 126 KVVANLPYYITSPILMNLLASPVEWATICVMMQKEVAQRLTAKP-GTKQYGALTLAIEYQMQAKIAFDVSRKVFVPAPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQSVIGKDPAAKEKMTAVLNQLDISPQIRPEKLTLEQFIELANALHQ 293
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECO81 (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli O81 (strain ED1a) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 45/164 (27.44%), Postives = 83/164 (50.61%), Query Frame = -2 Query: 378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869 +V N+P+NIST ++ L D +++ +LQ+E RLV + Y +++ +Y +VP + F P PKVD+AVV + AT V + + + AFN +RK +R SL +L ++ + L +G+ R E +++ + ++ N + + Sbjct: 109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSA----EVLTGMGIDPAMRAENISVAQYCQMANYLAE 266
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECO55 (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli (strain 55989 / EAEC) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 45/164 (27.44%), Postives = 83/164 (50.61%), Query Frame = -2 Query: 378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869 +V N+P+NIST ++ L D +++ +LQ+E RLV + Y +++ +Y +VP + F P PKVD+AVV + AT V + + + AFN +RK +R SL +L ++ + L +G+ R E +++ + ++ N + + Sbjct: 109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSA----EVLTGMGIDPAMRAENISVAQYCQMANYLAE 266
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_DESVV (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 44/160 (27.50%), Postives = 86/160 (53.75%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ-HLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 869 KV+ N+P+N+++ ++ + ++Q+E R+V P R +Y +++++ +++PE+ F VP F P+PKVD+AV+ F + TD P +K ++ F +RK L+ L+ H+ + L ++G+ +RPE L+ + F+ L Sbjct: 103 KVIGNLPYNVASPLMWDICSRAPGLVRASFMIQKEVGERIVAAPGSR--QYGALSVWLQCFTKPEWCFVVPPHVFTPRPKVDSAVLAFTPR--TDRPDAVQSKRLAHVLRLCFQQRRKQLQGILRPHV--GGDASALLAELGIDPAARPETLSPERFIAL 256
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_COXBU (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii GN=rsmA PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 44/167 (26.35%), Postives = 84/167 (50.30%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS-----LEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +VV N+P+NIST ++ L ++ +LQ+E +R + + + +Y +++ ++ + Y F V F P P+V++A++ + + P + +V AF+ +RK + +L+ L LEI L RP+ELT++DFVK+ N++ Sbjct: 102 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL---------RPQELTVEDFVKISNIL 257
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_COXBR (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 44/167 (26.35%), Postives = 84/167 (50.30%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS-----LEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +VV N+P+NIST ++ L ++ +LQ+E +R + + + +Y +++ ++ + Y F V F P P+V++A++ + + P + +V AF+ +RK + +L+ L LEI L RP+ELT++DFVK+ N++ Sbjct: 102 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAKYFCDNTYLFTVSPQAFTPPPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL---------RPQELTVEDFVKISNIL 257
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_COXBN (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rsmA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11 Identity = 44/167 (26.35%), Postives = 84/167 (50.30%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS-----LEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +VV N+P+NIST ++ L ++ +LQ+E +R + + + +Y +++ ++ + Y F V F P P+V++A++ + + P + +V AF+ +RK + +L+ L LEI L RP+ELT++DFVK+ N++ Sbjct: 102 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL---------RPQELTVEDFVKISNIL 257 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |