CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_VIBC3 (Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = -2
Query:  390 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 869
            +V  N+P+NIST ++  L        ++  +LQ+E   RL      T  Y  + +   +Y +     +VP + F P PKVD+AVV     +   +PA TS +    +V   FN +RK +R   + L       + L  +G+    RPE LTL  FV L N
Sbjct:  108 RVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGP-GTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPA-TSLEWLDRVVREGFNQRRKTVRNCYKGLAE----PETLETLGINPGMRPENLTLAQFVALAN 261          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PELLD (Ribosomal RNA small subunit methyltransferase A OS=Pelodictyon luteolum (strain DSM 273) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 52/166 (31.33%), Postives = 87/166 (52.41%), Query Frame = -2
Query:  384 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 878
            G  +V+ NIP++I+T ++ +LL      +   L++Q E A RLV  PS  T EY  + + +  + +  Y FKV R  F PQP VD+AV++   K+     AV   ++F   V +AF+ +RK L  +L+       +++  G + L    R E L+++    L  L+
Sbjct:  103 GPLRVLGNIPYSITTPILFKLLENRRSITSATLMMQHEVAARLVATPS--TKEYGILAVQLQTFCDVRYLFKVGRKVFRPQPNVDSAVISMVPKKNV---AVEDAQAFSRFVRTAFHQRRKTLYNNLKDAYMLQAVDE--GTLKL----RAEALSIEKLADLFKLV 257          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACRJ (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus reuteri (strain JCM 1112) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 44/169 (26.04%), Postives = 81/169 (47.93%), Query Frame = -2
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-----CTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            KVVAN+P+ I++ ++  LL     ++ + +++Q+E A RL      T +Y  + + + +  + +  F V R  F P P VD+A+V    +           +  F  +   F  +RK L  +LQ +         ++   L  + +    RPE+LTL+ F++L N + Q
Sbjct:  126 KVVANLPYYITSPILMNLLASPVEWATICVMMQKEVAQRLTAKP-GTKQYGALTLAIEYQMQAKIAFDVSRKVFVPAPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQSVIGKDPAAKEKMTAVLNQLDISPQIRPEKLTLEQFIELANALHQ 293          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACRD (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus reuteri (strain DSM 20016) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 44/169 (26.04%), Postives = 81/169 (47.93%), Query Frame = -2
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-----CTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            KVVAN+P+ I++ ++  LL     ++ + +++Q+E A RL      T +Y  + + + +  + +  F V R  F P P VD+A+V    +           +  F  +   F  +RK L  +LQ +         ++   L  + +    RPE+LTL+ F++L N + Q
Sbjct:  126 KVVANLPYYITSPILMNLLASPVEWATICVMMQKEVAQRLTAKP-GTKQYGALTLAIEYQMQAKIAFDVSRKVFVPAPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRRKSLWNNLQSVIGKDPAAKEKMTAVLNQLDISPQIRPEKLTLEQFIELANALHQ 293          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECO81 (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli O81 (strain ED1a) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 45/164 (27.44%), Postives = 83/164 (50.61%), Query Frame = -2
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L ++    + L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSA----EVLTGMGIDPAMRAENISVAQYCQMANYLAE 266          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECO55 (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli (strain 55989 / EAEC) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 45/164 (27.44%), Postives = 83/164 (50.61%), Query Frame = -2
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L ++    + L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSA----EVLTGMGIDPAMRAENISVAQYCQMANYLAE 266          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_DESVV (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 44/160 (27.50%), Postives = 86/160 (53.75%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ-HLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 869
            KV+ N+P+N+++ ++  +            ++Q+E   R+V  P  R  +Y  +++++  +++PE+ F VP   F P+PKVD+AV+ F  +  TD P    +K    ++   F  +RK L+  L+ H+    +    L ++G+   +RPE L+ + F+ L
Sbjct:  103 KVIGNLPYNVASPLMWDICSRAPGLVRASFMIQKEVGERIVAAPGSR--QYGALSVWLQCFTKPEWCFVVPPHVFTPRPKVDSAVLAFTPR--TDRPDAVQSKRLAHVLRLCFQQRRKQLQGILRPHV--GGDASALLAELGIDPAARPETLSPERFIAL 256          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_COXBU (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii GN=rsmA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 44/167 (26.35%), Postives = 84/167 (50.30%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS-----LEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +VV N+P+NIST ++  L        ++  +LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P P+V++A++   + +    P   +      +V  AF+ +RK +  +L+ L        LEI   L         RP+ELT++DFVK+ N++
Sbjct:  102 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL---------RPQELTVEDFVKISNIL 257          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_COXBR (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 44/167 (26.35%), Postives = 84/167 (50.30%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS-----LEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +VV N+P+NIST ++  L        ++  +LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P P+V++A++   + +    P   +      +V  AF+ +RK +  +L+ L        LEI   L         RP+ELT++DFVK+ N++
Sbjct:  102 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAKYFCDNTYLFTVSPQAFTPPPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL---------RPQELTVEDFVKISNIL 257          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_COXBN (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 44/167 (26.35%), Postives = 84/167 (50.30%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS-----LEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +VV N+P+NIST ++  L        ++  +LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P P+V++A++   + +    P   +      +V  AF+ +RK +  +L+ L        LEI   L         RP+ELT++DFVK+ N++
Sbjct:  102 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLLEINPQL---------RPQELTVEDFVKISNIL 257          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_VIBC34.204e-1131.25Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PELLD4.204e-1131.33Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACRJ4.204e-1126.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACRD4.204e-1126.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECO814.204e-1127.44Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECO554.204e-1127.44Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_DESVV4.204e-1127.50Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COXBU4.204e-1126.35Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COXBR4.204e-1126.35Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COXBN4.204e-1126.35Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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