CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECOLU (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECOLI (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli (strain K12) GN=rsmA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECOLC (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECOL6 (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli O6 GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECOL5 (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECOK1 (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli O1:K1 / APEC GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECOHS (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli O9:H4 (strain HS) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECODH (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli (strain K12 / DH10B) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECOBW (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli (strain K12 / BW2952) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ECO8A (Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli O8 (strain IAI1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = -2 
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +V  N+P+NIST ++  L    D  +++  +LQ+E   RLV     +  Y  +++   +Y       +VP + F P PKVD+AVV   +  AT    V   +    + + AFN +RK +R SL +L  S+E+   L  +G+    R E +++  + ++ N + +
Sbjct:  109 RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNL-FSVEV---LTGMGIDPAMRAENISVAQYCQMANYLAE 266
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_ECOLU5.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECOLI5.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECOLC5.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECOL65.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECOL55.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECOK15.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECOHS5.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECODH5.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECOBW5.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ECO8A5.491e-1128.66Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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