CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_HAEIG (Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain PittGG) GN=rsmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = -2
Query:  390 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 869
            +V  N+P+NIST ++  L    D+  ++  +LQ+E   RL   +  +  Y  + I   ++ +     +VP + F P PKVD+AVV     +   +P V        + S AFN +RK LR +L    ++L   + L  +G+   +R E L + D+ +L N
Sbjct:  114 RVFGNLPYNISTPLMFHLFKYHDVIQDMHFMLQKEVVKRLC-AAPNSKAYGRLTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHP-VKDLYWLNRVCSQAFNQRRKTLRNAL----STLFSPENLTALGIDLNARAENLAIADYARLAN 267          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_HAEIE (Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain PittEE) GN=rsmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = -2
Query:  390 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 869
            +V  N+P+NIST ++  L    D+  ++  +LQ+E   RL   +  +  Y  + I   ++ +     +VP + F P PKVD+AVV     +   +P V        + S AFN +RK LR +L    ++L   + L  +G+   +R E L + D+ +L N
Sbjct:  114 RVFGNLPYNISTPLMFHLFKYHDVIQDMHFMLQKEVVKRLC-AAPNSKAYGRLTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHP-VKDLYWLNRVCSQAFNQRRKTLRNAL----STLFSPENLTALGIDLNARAENLAIADYARLAN 267          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_DESVH (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rsmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 44/160 (27.50%), Postives = 85/160 (53.12%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ-HLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 869
            KV+ N+P+N+++ ++  +            ++Q+E   R+V  P  R  +Y  +++++  +++PE+ F VP   F P+PKVD+AV+ F  +  TD P    +K    ++   F  +RK L+  L+ H+    +    L  +G+   +RPE L+ + F+ L
Sbjct:  103 KVIGNLPYNVASPLMWDICSRAPGLLRASFMIQKEVGERIVAAPGSR--QYGALSVWLQCFTKPEWCFVVPPHVFTPRPKVDSAVLAFTPR--TDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHV--GGDASALLAGLGIDPAARPETLSPERFIAL 256          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_DESAD (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rsmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+V N+P+N+++ ++  +    +  +  V ++Q E A R V     + +Y  I++++  +   +Y FKVP T F P+PKVD+AV+ F      + P  +  +    +V   F  +RK L K L+   +   I+ A  + G+  T RPE L+   F  L+  +
Sbjct:  101 KIVGNLPYNVASKIMWDIAAQCN--ATCVFMVQHEVAQR-VTSGPGSKKYGAISVWIQSFCRTDYLFKVPPTVFKPKPKVDSAVIKFFPLPEEEKP--SDIEGLAKLVKYCFQYRRKQLGKILKSFISDAVIQWAEKE-GVSLTDRPEALSPLQFQSLYKSV 256          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLI (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rsmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = -2
Query:  384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS----------FFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866
            +VAN+P+N++T ++  LL   D     ++++Q+E A RL  +P  +   Y   ++ + +Y   E    + R  F+P P VD+A+V F   QA D PA   T +           F ++ +AF  +RK L  +L+ +  S    +A    G+  T R E LT+ +F  L   I
Sbjct:  133 LVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADD-PAAPGTANSTDDGTQRELVFRLIDAAFGQRRKTLHAALKTIAPS----EAFSIAGIDPTRRGETLTIAEFTALAKAI 297          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLD (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum (strain DJO10A) GN=rsmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = -2
Query:  384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS----------FFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866
            +VAN+P+N++T ++  LL   D     ++++Q+E A RL  +P  +   Y   ++ + +Y   E    + R  F+P P VD+A+V F   QA D PA   T +           F ++ +AF  +RK L  +L+ +  S    +A    G+  T R E LT+ +F  L   I
Sbjct:  133 LVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADD-PAAPGTANSTDDGTQRELVFRLIDAAFGQRRKTLHAALKTIAPS----EAFSIAGIDPTRRGETLTIAEFTALAKAI 297          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_HAEIG9.366e-1129.38Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_HAEIE9.366e-1129.38Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_DESVH9.366e-1127.50Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_DESAD9.366e-1128.40Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BIFLI9.366e-1129.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BIFLD9.366e-1129.65Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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