CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_HAEIG (Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain PittGG) GN=rsmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = -2 Query: 390 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 869 +V N+P+NIST ++ L D+ ++ +LQ+E RL + + Y + I ++ + +VP + F P PKVD+AVV + +P V + S AFN +RK LR +L ++L + L +G+ +R E L + D+ +L N Sbjct: 114 RVFGNLPYNISTPLMFHLFKYHDVIQDMHFMLQKEVVKRLC-AAPNSKAYGRLTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHP-VKDLYWLNRVCSQAFNQRRKTLRNAL----STLFSPENLTALGIDLNARAENLAIADYARLAN 267
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_HAEIE (Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain PittEE) GN=rsmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = -2 Query: 390 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 869 +V N+P+NIST ++ L D+ ++ +LQ+E RL + + Y + I ++ + +VP + F P PKVD+AVV + +P V + S AFN +RK LR +L ++L + L +G+ +R E L + D+ +L N Sbjct: 114 RVFGNLPYNISTPLMFHLFKYHDVIQDMHFMLQKEVVKRLC-AAPNSKAYGRLTIMAQYFCQVMPVLEVPPSAFKPAPKVDSAVVRLIPHKELPHP-VKDLYWLNRVCSQAFNQRRKTLRNAL----STLFSPENLTALGIDLNARAENLAIADYARLAN 267
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_DESVH (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rsmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 44/160 (27.50%), Postives = 85/160 (53.12%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ-HLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 869 KV+ N+P+N+++ ++ + ++Q+E R+V P R +Y +++++ +++PE+ F VP F P+PKVD+AV+ F + TD P +K ++ F +RK L+ L+ H+ + L +G+ +RPE L+ + F+ L Sbjct: 103 KVIGNLPYNVASPLMWDICSRAPGLLRASFMIQKEVGERIVAAPGSR--QYGALSVWLQCFTKPEWCFVVPPHVFTPRPKVDSAVLAFTPR--TDRPDAVQSKRLARVLRLCFQQRRKQLQGILRPHV--GGDASALLAGLGIDPAARPETLSPERFIAL 256
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_DESAD (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rsmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+V N+P+N+++ ++ + + + V ++Q E A R V + +Y I++++ + +Y FKVP T F P+PKVD+AV+ F + P + + +V F +RK L K L+ + I+ A + G+ T RPE L+ F L+ + Sbjct: 101 KIVGNLPYNVASKIMWDIAAQCN--ATCVFMVQHEVAQR-VTSGPGSKKYGAISVWIQSFCRTDYLFKVPPTVFKPKPKVDSAVIKFFPLPEEEKP--SDIEGLAKLVKYCFQYRRKQLGKILKSFISDAVIQWAEKE-GVSLTDRPEALSPLQFQSLYKSV 256
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLI (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rsmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = -2 Query: 384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS----------FFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866 +VAN+P+N++T ++ LL D ++++Q+E A RL +P + Y ++ + +Y E + R F+P P VD+A+V F QA D PA T + F ++ +AF +RK L +L+ + S +A G+ T R E LT+ +F L I Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADD-PAAPGTANSTDDGTQRELVFRLIDAAFGQRRKTLHAALKTIAPS----EAFSIAGIDPTRRGETLTIAEFTALAKAI 297
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLD (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum (strain DJO10A) GN=rsmA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11 Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = -2 Query: 384 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS----------FFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 866 +VAN+P+N++T ++ LL D ++++Q+E A RL +P + Y ++ + +Y E + R F+P P VD+A+V F QA D PA T + F ++ +AF +RK L +L+ + S +A G+ T R E LT+ +F L I Sbjct: 133 LVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADD-PAAPGTANSTDDGTQRELVFRLIDAAFGQRRKTLHAALKTIAPS----EAFSIAGIDPTRRGETLTIAEFTALAKAI 297 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |