CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_THETN (Ribosomal RNA small subunit methyltransferase A OS=Thermoanaerobacter tengcongensis GN=rsmA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16 Identity = 57/165 (34.55%), Postives = 94/165 (56.97%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLI 869 KVVAN+P+ I++ +I ++L + E+ +L+Q+E A R+ T +Y + +FVNF ++PE F +P F P PKV+++++ K+ D P V K F +V +AF +RK+L SL+ L S E+ + L VG+ +R E L++D F L N + Sbjct: 103 KVVANLPYYITSPIIMKMLDC-KLVKEMTVLVQKEVAERICALP-GTKDYGMLTVFVNFKAKPEILFNLPPKVFVPPPKVESSLLKLKV---YDKPLVEVKDEKLFSEVVRAAFGQRRKVLSNSLKVLGFSKEVLHETLLKVGISPQARGETLSIDQFANLANAL 262
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACS1 (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rsmA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16 Identity = 54/170 (31.76%), Postives = 92/170 (54.12%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 K+VAN+P+ I+T ++ LL G F +V+++Q+E A RL + T Y +++ V + + E F VP+T F PQP VD+A++ K+ K F +V +F +RK L +LQ L T ++ +AL + + R E+LT+ DF+ L + +V++ Sbjct: 126 KLVANLPYYITTPILMHLLDSGIEFETIVVMMQKEVAERLAA-NPGTKAYGSLSVAVQYEMDSEIAFIVPKTVFVPQPNVDSAIIVLNKKKVKP-KEPQDEKHFKKLVKGSFMHRRKSLWNNLQSLYGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDALVKM 293
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ANAVT (Ribosomal RNA small subunit methyltransferase A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rsmA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16 Identity = 56/167 (33.53%), Postives = 93/167 (55.69%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 KVVANIP+NI+ +I++LL P + F +VLL+Q+E A RL + + + +++ V + ++ E+ VP F P PKVD+AVV + +Q PA K ++V F KRKMLR +LQ + + + L + + +R E+++ +V+L NL+ Sbjct: 105 KVVANIPYNITGPIIEKLLGTIANPNPEPFDSIVLLIQKEVAERLYAKA-GSRTFGALSVRVQYLADCEFICDVPAGAFHPPPKVDSAVVRLRPRQI-QIPA-RDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQLLEQLNINPQARAEDISTQQWVELANLL 268
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SHESH (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sediminis (strain HAW-EB3) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15 Identity = 50/163 (30.67%), Postives = 85/163 (52.15%), Query Frame = -2 Query: 381 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 869 KV N+P+NIST ++ L + + +LQ+E LRL S T Y + + ++ + +VP +F P PKVD+AVV + +P + ++AFN +RK LR +L+H+ + E +G+ AT RPE++T+ +V + NL++ Sbjct: 108 KVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYHCQVMPVLEVPPHSFTPAPKVDSAVVRLVPYKTKPWPC-KDVDQLRHLTTTAFNMRRKTLRNNLKHMISDEEFAA----LGIDATLRPEQITVQQYVAMANLVI 264
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PEDPA (Ribosomal RNA small subunit methyltransferase A OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15 Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ I+T ++K + ++V+++Q+E A RL +P EY +++ V + + +F V F P+PKVD+A+V+ + + K FF V F +RK + ++Q L +I+ L D+G+ RPE LT+ DF+KLHN I Sbjct: 125 KLVANLPYYITTPILKTFMASTLPIDKMVVMMQKEVAERLTAQPG--DKEYGSLSVVVQYRMNTQIEFDVSSKVFVPRPKVDSAIVSLTPRAGWEVMP-EDDKDFFKTVHGCFMHRRKNIWNNMQGLYGKEPEIKAKIQNVLDDLGIDPQVRPERLTVLDFIKLHNRI 289
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACHK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus thuringiensis subsp. konkukian GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ I+T ++ +LL V+++Q+E RL T EY ++I + +Y+E E VPRT F PQP VD+A++ LK+ VT FF +V ++F +RK L +L + +++ L +VG+ R E L++++F L N +V Sbjct: 123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACCZ (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ZK / E33L) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ I+T ++ +LL V+++Q+E RL T EY ++I + +Y+E E VPRT F PQP VD+A++ LK+ VT FF +V ++F +RK L +L + +++ L +VG+ R E L++++F L N +V Sbjct: 123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACCR (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ I+T ++ +LL V+++Q+E RL T EY ++I + +Y+E E VPRT F PQP VD+A++ LK+ VT FF +V ++F +RK L +L + +++ L +VG+ R E L++++F L N +V Sbjct: 123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACCQ (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain Q1) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ I+T ++ +LL V+++Q+E RL T EY ++I + +Y+E E VPRT F PQP VD+A++ LK+ VT FF +V ++F +RK L +L + +++ L +VG+ R E L++++F L N +V Sbjct: 123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACC7 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain AH187) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ I+T ++ +LL V+++Q+E RL T EY ++I + +Y+E E VPRT F PQP VD+A++ LK+ VT FF +V ++F +RK L +L + +++ L +VG+ R E L++++F L N +V Sbjct: 123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |