CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_THETN (Ribosomal RNA small subunit methyltransferase A OS=Thermoanaerobacter tengcongensis GN=rsmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 57/165 (34.55%), Postives = 94/165 (56.97%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            KVVAN+P+ I++ +I ++L    +  E+ +L+Q+E A R+      T +Y  + +FVNF ++PE  F +P   F P PKV+++++  K+    D P   V   K F  +V +AF  +RK+L  SL+ L  S E+  + L  VG+   +R E L++D F  L N +
Sbjct:  103 KVVANLPYYITSPIIMKMLDC-KLVKEMTVLVQKEVAERICALP-GTKDYGMLTVFVNFKAKPEILFNLPPKVFVPPPKVESSLLKLKV---YDKPLVEVKDEKLFSEVVRAAFGQRRKVLSNSLKVLGFSKEVLHETLLKVGISPQARGETLSIDQFANLANAL 262          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACS1 (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rsmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 54/170 (31.76%), Postives = 92/170 (54.12%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            K+VAN+P+ I+T ++  LL  G  F  +V+++Q+E A RL   +  T  Y  +++ V +  + E  F VP+T F PQP VD+A++    K+          K F  +V  +F  +RK L  +LQ L      T  ++ +AL    +  + R E+LT+ DF+ L + +V++
Sbjct:  126 KLVANLPYYITTPILMHLLDSGIEFETIVVMMQKEVAERLAA-NPGTKAYGSLSVAVQYEMDSEIAFIVPKTVFVPQPNVDSAIIVLNKKKVKP-KEPQDEKHFKKLVKGSFMHRRKSLWNNLQSLYGKDPETKEKMLQALEVADIKQSIRAEKLTVADFINLSDALVKM 293          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_ANAVT (Ribosomal RNA small subunit methyltransferase A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rsmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 56/167 (33.53%), Postives = 93/167 (55.69%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            KVVANIP+NI+  +I++LL     P  + F  +VLL+Q+E A RL   +  +  +  +++ V + ++ E+   VP   F P PKVD+AVV  + +Q    PA    K   ++V   F  KRKMLR +LQ +     + + L  + +   +R E+++   +V+L NL+
Sbjct:  105 KVVANIPYNITGPIIEKLLGTIANPNPEPFDSIVLLIQKEVAERLYAKA-GSRTFGALSVRVQYLADCEFICDVPAGAFHPPPKVDSAVVRLRPRQI-QIPA-RDPKRLENLVKLGFGAKRKMLRNNLQSVVDRDRLSQLLEQLNINPQARAEDISTQQWVELANLL 268          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_SHESH (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sediminis (strain HAW-EB3) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 50/163 (30.67%), Postives = 85/163 (52.15%), Query Frame = -2
Query:  381 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 869
            KV  N+P+NIST ++  L    +    +  +LQ+E  LRL   S  T  Y  + +   ++ +     +VP  +F P PKVD+AVV     +   +P          + ++AFN +RK LR +L+H+ +  E       +G+ AT RPE++T+  +V + NL++
Sbjct:  108 KVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYHCQVMPVLEVPPHSFTPAPKVDSAVVRLVPYKTKPWPC-KDVDQLRHLTTTAFNMRRKTLRNNLKHMISDEEFAA----LGIDATLRPEQITVQQYVAMANLVI 264          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PEDPA (Ribosomal RNA small subunit methyltransferase A OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ I+T ++K  +       ++V+++Q+E A RL  +P     EY  +++ V +    + +F V    F P+PKVD+A+V+   +   +       K FF  V   F  +RK +  ++Q L         +I+  L D+G+    RPE LT+ DF+KLHN I
Sbjct:  125 KLVANLPYYITTPILKTFMASTLPIDKMVVMMQKEVAERLTAQPG--DKEYGSLSVVVQYRMNTQIEFDVSSKVFVPRPKVDSAIVSLTPRAGWEVMP-EDDKDFFKTVHGCFMHRRKNIWNNMQGLYGKEPEIKAKIQNVLDDLGIDPQVRPERLTVLDFIKLHNRI 289          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACHK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus thuringiensis subsp. konkukian GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACCZ (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ZK / E33L) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACCR (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACCQ (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain Q1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACC7 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain AH187) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_THETN9.670e-1634.55Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACS19.670e-1631.76Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ANAVT9.670e-1633.53Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHESH1.263e-1530.67Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PEDPA1.263e-1531.55Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACHK1.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACCZ1.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACCR1.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACCQ1.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACC71.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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