CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACC4 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain B4264) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACC2 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain G9842) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACC1 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ATCC 10987) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACC0 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain AH820) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACAN (Ribosomal RNA small subunit methyltransferase A OS=Bacillus anthracis GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACAC (Ribosomal RNA small subunit methyltransferase A OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACAA (Ribosomal RNA small subunit methyltransferase A OS=Bacillus anthracis (strain A0248) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISW6 (Ribosomal RNA small subunit methyltransferase A OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2 
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I +LL        +  +LQ+E A R+   PS  T  Y  + I + FY E E  F VP+T F PQP VD+AV+  K ++      V   + FF +  ++F  +RK L  +L     +L     E+ + L  +G+    R E L + +F KL N +
Sbjct:  124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISMO (Ribosomal RNA small subunit methyltransferase A OS=Listeria monocytogenes GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2 
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I +LL        +  +LQ+E A R+   PS  T  Y  + I + FY E E  F VP+T F PQP VD+AV+  K ++      V   + FF +  ++F  +RK L  +L     +L     E+ + L  +G+    R E L + +F KL N +
Sbjct:  124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288
[Close]
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISMH (Ribosomal RNA small subunit methyltransferase A OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2 
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I +LL        +  +LQ+E A R+   PS  T  Y  + I + FY E E  F VP+T F PQP VD+AV+  K ++      V   + FF +  ++F  +RK L  +L     +L     E+ + L  +G+    R E L + +F KL N +
Sbjct:  124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_BACC41.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACC21.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACC11.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACC01.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACAN1.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACAC1.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACAA1.263e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LISW61.649e-1532.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LISMO1.649e-1532.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LISMH1.649e-1532.74Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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