CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISMF (Ribosomal RNA small subunit methyltransferase A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15 Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L +L E+ + L +G+ R E L + +F KL N + Sbjct: 124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISMC (Ribosomal RNA small subunit methyltransferase A OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15 Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L +L E+ + L +G+ R E L + +F KL N + Sbjct: 124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACWK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15 Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ I+T ++ +LL V+++Q+E RL T EY ++I + +Y+E E VPRT F PQP VD+A++ LK+ VT FF +V ++F +RK L +L + +++ L +VG+ R E L++++F L N ++ Sbjct: 123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALI 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MOOTA (Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15 Identity = 53/160 (33.12%), Postives = 87/160 (54.37%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-CTSLEIEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ LL +E+VL++Q E R L P + +Y +++ V +Y+EP KVPRT F+P+P+VD+ V+ + V FF +V +AFN +RK + +L L +I +AL G+ R E L +++F + Sbjct: 126 KVVANLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPGGK--DYGALSVVVQYYTEPAVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAFNQRRKTILNALGSLGFEKSKIMEALAGAGIDPRRRGETLGMEEFASI 282
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISIN (Ribosomal RNA small subunit methyltransferase A OS=Listeria innocua GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15 Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L +L E+ + L +G+ R E L + +F KL N + Sbjct: 124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKEELIEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_HALHL (Ribosomal RNA small subunit methyltransferase A OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15 Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = -2 Query: 396 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 878 G +VV N+P+N+ST ++ LL D+ ++ LLLQ E R+V P + R +++ V + E F VP FFP PKV ++ V +L PA +++ +V++AF G+RK LR SL+ L T+ E A G+ +R E L+++ FV+L Sbjct: 97 GRLRVVGNLPYNVSTPILFHLLAAADVIEDLHLLLQREVVDRMVAPPGGKTRGR-LSVMVQYRCRVERCFNVPAGAFFPAPKVMSSFV--RLVPHRPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEAA----GVDPGARAETLSVEAFVRL 251
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOPS (Ribosomal RNA small subunit methyltransferase A OS=Clostridium perfringens (strain SM101 / Type A) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15 Identity = 54/164 (32.93%), Postives = 92/164 (56.10%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ ++T +I LL G F + +++Q+E A R+ EP+ + +Y ++I V +Y + KVP + F P+PKVD+ V+ + + V + K FF +V AFN +RK L + +++ E+ EKA + G+ R E L+L +F L + I Sbjct: 119 KLVANLPYYVTTPIIVNLLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSV-KVKNEKLFFEIVRHAFNMRRKTLWNATKNVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOPE (Ribosomal RNA small subunit methyltransferase A OS=Clostridium perfringens GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15 Identity = 54/164 (32.93%), Postives = 92/164 (56.10%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ ++T +I LL G F + +++Q+E A R+ EP+ + +Y ++I V +Y + KVP + F P+PKVD+ V+ + + V + K FF +V AFN +RK L + +++ E+ EKA + G+ R E L+L +F L + I Sbjct: 119 KLVANLPYYVTTPIIVNLLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSV-KVKNEKLFFEIVRHAFNMRRKTLWNATKNVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOP1 (Ribosomal RNA small subunit methyltransferase A OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15 Identity = 54/164 (32.93%), Postives = 92/164 (56.10%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ ++T +I LL G F + +++Q+E A R+ EP+ + +Y ++I V +Y + KVP + F P+PKVD+ V+ + + V + K FF +V AFN +RK L + +++ E+ EKA + G+ R E L+L +F L + I Sbjct: 119 KLVANLPYYVTTPIIVNLLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSV-KVKNEKLFFEIVRHAFNMRRKTLWNATKNVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACC3 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain 03BB102) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ I+T ++ +LL V+++Q+E RL T EY ++I + +Y+E E VPRT F PQP VD+A++ LK+ VT FF +V ++F +RK L +L + +++ L +VG+ R E L++++F L N +V Sbjct: 123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |