CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISMF (Ribosomal RNA small subunit methyltransferase A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I +LL        +  +LQ+E A R+   PS  T  Y  + I + FY E E  F VP+T F PQP VD+AV+  K ++      V   + FF +  ++F  +RK L  +L     +L     E+ + L  +G+    R E L + +F KL N +
Sbjct:  124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISMC (Ribosomal RNA small subunit methyltransferase A OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I +LL        +  +LQ+E A R+   PS  T  Y  + I + FY E E  F VP+T F PQP VD+AV+  K ++      V   + FF +  ++F  +RK L  +L     +L     E+ + L  +G+    R E L + +F KL N +
Sbjct:  124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACWK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N ++
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDETFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALI 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MOOTA (Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 53/160 (33.12%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-CTSLEIEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  LL      +E+VL++Q E   R L  P  +  +Y  +++ V +Y+EP    KVPRT F+P+P+VD+ V+    +       V     FF +V +AFN +RK +  +L  L     +I +AL   G+    R E L +++F  +
Sbjct:  126 KVVANLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPGGK--DYGALSVVVQYYTEPAVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAFNQRRKTILNALGSLGFEKSKIMEALAGAGIDPRRRGETLGMEEFASI 282          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LISIN (Ribosomal RNA small subunit methyltransferase A OS=Listeria innocua GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I +LL        +  +LQ+E A R+   PS  T  Y  + I + FY E E  F VP+T F PQP VD+AV+  K ++      V   + FF +  ++F  +RK L  +L     +L     E+ + L  +G+    R E L + +F KL N +
Sbjct:  124 KIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKEELIEGLNAIGIDLIRRGETLDIPEFAKLSNFL 288          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_HALHL (Ribosomal RNA small subunit methyltransferase A OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = -2
Query:  396 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 878
            G  +VV N+P+N+ST ++  LL   D+  ++ LLLQ E   R+V P    +  R +++ V +    E  F VP   FFP PKV ++ V  +L      PA    +++   +V++AF G+RK LR SL+ L T+   E A    G+   +R E L+++ FV+L
Sbjct:   97 GRLRVVGNLPYNVSTPILFHLLAAADVIEDLHLLLQREVVDRMVAPPGGKTRGR-LSVMVQYRCRVERCFNVPAGAFFPAPKVMSSFV--RLVPHRPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEAA----GVDPGARAETLSVEAFVRL 251          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOPS (Ribosomal RNA small subunit methyltransferase A OS=Clostridium perfringens (strain SM101 / Type A) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 54/164 (32.93%), Postives = 92/164 (56.10%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I  LL  G  F  + +++Q+E A R+  EP+ +  +Y  ++I V +Y   +   KVP + F P+PKVD+ V+  +  +      V + K FF +V  AFN +RK L  + +++    E+ EKA  + G+    R E L+L +F  L + I
Sbjct:  119 KLVANLPYYVTTPIIVNLLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSV-KVKNEKLFFEIVRHAFNMRRKTLWNATKNVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOPE (Ribosomal RNA small subunit methyltransferase A OS=Clostridium perfringens GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 54/164 (32.93%), Postives = 92/164 (56.10%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I  LL  G  F  + +++Q+E A R+  EP+ +  +Y  ++I V +Y   +   KVP + F P+PKVD+ V+  +  +      V + K FF +V  AFN +RK L  + +++    E+ EKA  + G+    R E L+L +F  L + I
Sbjct:  119 KLVANLPYYVTTPIIVNLLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSV-KVKNEKLFFEIVRHAFNMRRKTLWNATKNVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_CLOP1 (Ribosomal RNA small subunit methyltransferase A OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 54/164 (32.93%), Postives = 92/164 (56.10%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ ++T +I  LL  G  F  + +++Q+E A R+  EP+ +  +Y  ++I V +Y   +   KVP + F P+PKVD+ V+  +  +      V + K FF +V  AFN +RK L  + +++    E+ EKA  + G+    R E L+L +F  L + I
Sbjct:  119 KLVANLPYYVTTPIIVNLLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYYCNTKIVRKVPPSCFIPRPKVDSIVIRLERLEEPSV-KVKNEKLFFEIVRHAFNMRRKTLWNATKNVKLPKELMEKAYEEAGIDPKRRGETLSLAEFGALSDAI 279          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACC3 (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain 03BB102) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_LISMF1.649e-1532.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LISMC1.649e-1532.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACWK1.649e-1531.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MOOTA2.154e-1533.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LISIN2.154e-1532.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_HALHL2.154e-1534.57Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOPS2.154e-1532.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOPE2.154e-1532.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CLOP12.154e-1532.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACC32.154e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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