CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACAH (Ribosomal RNA small subunit methyltransferase A OS=Bacillus thuringiensis (strain Al Hakam) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ I+T ++ +LL V+++Q+E RL T EY ++I + +Y+E E VPRT F PQP VD+A++ LK+ VT FF +V ++F +RK L +L + +++ L +VG+ R E L++++F L N +V Sbjct: 123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRR6 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15 Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRPS (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain CGSP14) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15 Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRP2 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15 Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MESFL (Ribosomal RNA small subunit methyltransferase A OS=Mesoplasma florum GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15 Identity = 41/162 (25.31%), Postives = 93/162 (57.41%), Query Frame = -2 Query: 390 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV--TFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT-SLEIEKALGDVGLPATSRPEELTLDDFVKLHN 866 +++N+P+ I+++++ + L + D ++ V ++Q+E A+R+ + Y +++ FY++ +Y+F VP+ F+P PKVD+A++ TF K + F + + FN +RK + +L ++ + + L ++ + + RPE + L+DF++++N Sbjct: 107 IISNMPYYITSEILFRTLNVSDKLTKAVFMMQKEVAIRVCSYK-GENNYNNLSVACEFYADKKYEFTVPKHMFYPVPKVDSAIISLTFNNKYTEQ---IKDKDKFLTFLRKIFNNRRKTILNNLSNVTNDKTKANEILDNLNIDKSLRPEVVGLEDFIRIYN 264
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACSU (Ribosomal RNA small subunit methyltransferase A OS=Bacillus subtilis GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15 Identity = 56/167 (33.53%), Postives = 92/167 (55.09%), Query Frame = -2 Query: 390 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSL-----QHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 866 VVAN+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F PQP VD+AV+ L+ D PA V + FF ++ ++F +RK L +L + IE+ L + + R E L++++F L N Sbjct: 124 VVANLPYYVTTPIIMKLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFVPQPNVDSAVIRLILR---DGPAVDVENESFFFQLIKASFAQRRKTLLNNLVNNLPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSN 285
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BLOFL (Ribosomal RNA small subunit methyltransferase A OS=Blochmannia floridanus GN=rsmA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15 Identity = 52/163 (31.90%), Postives = 89/163 (54.60%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSS-AFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +++ N+P+NIST +I L +I ++ +LQ+E A R+V Y ++IF +Y + + +VP+ +F P PKV++ +V F + T+ P T S S+++ AF+ +RK++ SL L S EI + G+ SR E LT+ F KL ++ Sbjct: 108 RLIGNLPYNISTKLIIHLYKYINIIHDMHFMLQKEVAQRIVAQP-NNKAYGRLSIFAQYYCKVQALLEVPKKSFIPIPKVESMIVQF-IPYHTNNPYPTVNISLLSLLTKFAFHQRRKIIHNSLSSLLNSTEIIQC----GINTESRAENLTIQQFCKLTTIL 264
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACCN (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15 Identity = 52/167 (31.14%), Postives = 89/167 (53.29%), Query Frame = -2 Query: 381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866 VVAN+P+ ++T ++ +LL V+++Q+E RL T +Y ++I + +Y+E E VPRT F PQP VD++V+ LK+ V K FF +V ++F +RK L +L + +E+ L ++G+ R E L++++F L N +V Sbjct: 123 VVANLPYYVTTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSSVIRL-LKRPKPIVEVIDEKFFFEVVRASFAQRRKTLMNNLSNNLNDFPKDKELLERILTEIGIDPKRRGETLSIEEFAMLSNALV 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACH4 (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus helveticus (strain DPC 4571) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.799e-15 Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL-GDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T +I L F+ + L++Q+E A RL E + EY P+ I V + + +V +F P+PKVD++VV L + P + + K F +V F+ +RK L +L+ L E +AL +G+ RPE LT++ F+++ Sbjct: 132 KVVANLPYYITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISVQTEMDVKVALEVNHNSFMPRPKVDSSVVV--LTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEI 287
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRMU (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus mutans GN=rsmA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15 Identity = 58/171 (33.92%), Postives = 93/171 (54.39%), Query Frame = -2 Query: 375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-QHLCTSLEI----EKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869 KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L +L H S E+ E+AL + + R EELT+ DF +L + + +V Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYYMTAKIAFIVPRTVFVPAPNVDSAILKM-TRREQPLVQVQDEDFFFCVGKAAFVHRRKTLWNNLTSHFGKSEEVKVKLEQALEAADIKPSIRGEELTITDFARLADALREV 288 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |