CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACAH (Ribosomal RNA small subunit methyltransferase A OS=Bacillus thuringiensis (strain Al Hakam) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ I+T ++ +LL         V+++Q+E   RL      T EY  ++I + +Y+E E    VPRT F PQP VD+A++   LK+      VT    FF +V ++F  +RK L  +L +           +++ L +VG+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKEYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSAIIRL-LKRPKPVVEVTDEIFFFEVVRASFAQRRKTLMNNLSNNLNGFPKDKELLDRILTEVGIDPKRRGETLSIEEFATLSNALV 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRR6 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRPS (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain CGSP14) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRP2 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MESFL (Ribosomal RNA small subunit methyltransferase A OS=Mesoplasma florum GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15
Identity = 41/162 (25.31%), Postives = 93/162 (57.41%), Query Frame = -2
Query:  390 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV--TFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT-SLEIEKALGDVGLPATSRPEELTLDDFVKLHN 866
            +++N+P+ I+++++ + L + D  ++ V ++Q+E A+R+       + Y  +++   FY++ +Y+F VP+  F+P PKVD+A++  TF  K       +     F + +   FN +RK +  +L ++     +  + L ++ +  + RPE + L+DF++++N
Sbjct:  107 IISNMPYYITSEILFRTLNVSDKLTKAVFMMQKEVAIRVCSYK-GENNYNNLSVACEFYADKKYEFTVPKHMFYPVPKVDSAIISLTFNNKYTEQ---IKDKDKFLTFLRKIFNNRRKTILNNLSNVTNDKTKANEILDNLNIDKSLRPEVVGLEDFIRIYN 264          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACSU (Ribosomal RNA small subunit methyltransferase A OS=Bacillus subtilis GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.814e-15
Identity = 56/167 (33.53%), Postives = 92/167 (55.09%), Query Frame = -2
Query:  390 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSL-----QHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 866
            VVAN+P+ ++T +I +LL        +V++LQ+E A R+  +PS  + EY  ++I V FY+E +    VP+T F PQP VD+AV+   L+   D PA  V +   FF ++ ++F  +RK L  +L     +       IE+ L +  +    R E L++++F  L N
Sbjct:  124 VVANLPYYVTTPIIMKLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFVPQPNVDSAVIRLILR---DGPAVDVENESFFFQLIKASFAQRRKTLLNNLVNNLPEGKAQKSTIEQVLEETNIDGKRRGESLSIEEFAALSN 285          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BLOFL (Ribosomal RNA small subunit methyltransferase A OS=Blochmannia floridanus GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15
Identity = 52/163 (31.90%), Postives = 89/163 (54.60%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSS-AFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +++ N+P+NIST +I  L    +I  ++  +LQ+E A R+V        Y  ++IF  +Y + +   +VP+ +F P PKV++ +V F +   T+ P  T   S  S+++  AF+ +RK++  SL  L  S EI +     G+   SR E LT+  F KL  ++
Sbjct:  108 RLIGNLPYNISTKLIIHLYKYINIIHDMHFMLQKEVAQRIVAQP-NNKAYGRLSIFAQYYCKVQALLEVPKKSFIPIPKVESMIVQF-IPYHTNNPYPTVNISLLSLLTKFAFHQRRKIIHNSLSSLLNSTEIIQC----GINTESRAENLTIQQFCKLTTIL 264          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_BACCN (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15
Identity = 52/167 (31.14%), Postives = 89/167 (53.29%), Query Frame = -2
Query:  381 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLIV 866
            VVAN+P+ ++T ++ +LL         V+++Q+E   RL      T +Y  ++I + +Y+E E    VPRT F PQP VD++V+   LK+      V   K FF +V ++F  +RK L  +L +           +E+ L ++G+    R E L++++F  L N +V
Sbjct:  123 VVANLPYYVTTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKP-GTKDYGSLSIAIQYYTEVETVMTVPRTVFVPQPNVDSSVIRL-LKRPKPIVEVIDEKFFFEVVRASFAQRRKTLMNNLSNNLNDFPKDKELLERILTEIGIDPKRRGETLSIEEFAMLSNALV 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACH4 (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus helveticus (strain DPC 4571) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.799e-15
Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL-GDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T +I  L      F+ + L++Q+E A RL E    + EY P+ I V    + +   +V   +F P+PKVD++VV   L    + P + + K F  +V   F+ +RK L  +L+ L    E  +AL   +G+    RPE LT++ F+++
Sbjct:  132 KVVANLPYYITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISVQTEMDVKVALEVNHNSFMPRPKVDSSVVV--LTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNLKTLIPDSEKREALIKKLGVDPRVRPENLTIEQFIEI 287          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRMU (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus mutans GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 58/171 (33.92%), Postives = 93/171 (54.39%), Query Frame = -2
Query:  375 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-QHLCTSLEI----EKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 869
            KVVAN+P+ I+T ++  L+     F+E V+++Q+E A R+  +PS  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    ++      V     FF +  +AF  +RK L  +L  H   S E+    E+AL    +  + R EELT+ DF +L + + +V
Sbjct:  121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYYMTAKIAFIVPRTVFVPAPNVDSAILKM-TRREQPLVQVQDEDFFFCVGKAAFVHRRKTLWNNLTSHFGKSEEVKVKLEQALEAADIKPSIRGEELTITDFARLADALREV 288          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_BACAH2.154e-1532.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRR62.814e-1533.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRPS2.814e-1533.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRP22.814e-1533.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MESFL2.814e-1525.31Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACSU2.814e-1533.53Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BLOFL3.675e-1531.90Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACCN3.675e-1531.14Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACH44.799e-1533.33Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRMU6.268e-1533.92Ribosomal RNA small subunit methyltransferase A OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
back to top