CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PSEF5 (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15 Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = -2 Query: 396 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 878 G +VV N+P+NIST +I LL + ++ +LQ+E RL ++ ++I V ++ E+ F V F P PKVD+A+V +PA + +V AFN +RK LR +L+ L +S EIE A G+ + RPE+L L FV+L Sbjct: 103 GSLRVVGNLPYNISTPLIFHLLQNAGLIRDMHFMLQKEVVERLA-AGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPHAVLPHPA-KDHRLLERIVREAFNQRRKTLRNTLKALLSSAEIEAA----GVDGSLRPEQLDLAAFVRL 257
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MARAV (Ribosomal RNA small subunit methyltransferase A OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15 Identity = 51/162 (31.48%), Postives = 88/162 (54.32%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 ++V N+P+NIST +I LL + ++ +LQ+E RL + Y + I ++ + + F+V F P PKVD+A+V + YPA K+ ++V +AFN +RK LRK+L + T +++ +G+ RPE L L D+V++ +L+ Sbjct: 105 RIVGNLPYNISTPLIFHLLSQSGVVQDMHFMLQKEVVQRLAAVP-GDNNYGRLGIMAQYFCKVQPLFEVGPGAFRPAPKVDSAIVRLVPHKELPYPA-KDLKTLQAVVRTAFNARRKTLRKALAAMVTVEQLQ----SLGINDGLRPENLGLADYVRIADLL 260
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACSS (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15 Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK-----ALGDVGLPATSRPEELTLDDFVKLHNLI 869 K+VAN+P+ I+T ++ LL G +VL++Q+E A R ++ + + Y ++I V +SE + F VP+T F PQP VD+A+V F +Q P VT + + F +V AF +RK L +LQ+ E K AL + ++R E+L++ F +L + + Sbjct: 122 KIVANLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAER-IDAAPGSKAYGSLSIAVQLHSEVKLAFIVPKTAFVPQPNVDSAIVEFVGRQE---PLVTVQNQQLFDQLVRGAFAQRRKTLWNNLQNQFGKQEEVKAGLVAALDQADIAPSTRAEQLSIQQFAQLSDCL 286
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_GEOSW (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus sp. (strain WCH70) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15 Identity = 54/169 (31.95%), Postives = 89/169 (52.66%), Query Frame = -2 Query: 375 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH-----LCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 866 VVAN+P+ ++T +I +LL +V++LQ+E A RL T +Y ++I + +Y+E E VPRT F PQP VD+AV+ +K+ V FF +V ++F +RK + +L + +IE+ L + + R E LT+++F L N + V Sbjct: 124 VVANLPYYVTTPIIMKLLTDRLPIRGMVVMLQKEVADRLAAKP-GTKDYGSLSIAIQYYTEAETVMTVPRTVFIPQPNVDSAVIRL-IKRKQPPVKVEDEAFFFQVVRASFAQRRKTILNNLVNNLPNGKAMKEQIERVLTETDIDPRRRGETLTMEEFAALSNALQHV 290
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LEGPL (Ribosomal RNA small subunit methyltransferase A OS=Legionella pneumophila (strain Lens) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15 Identity = 48/162 (29.63%), Postives = 91/162 (56.17%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +VV N+P+NIST ++ LL ++ +LQ+E R+ T Y +++ + ++ E EY F VP F P+PKVD+A+V + + + +V +T+ ++V+ AF +RK L +L+ + + + L D+G+ RPE++++ ++V+L I Sbjct: 99 RVVGNLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAAAH-GTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRPKVDSAIVRLTPHRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIISLSQ----LNDLGIDGGKRPEQISVAEYVQLAKFI 254
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_HALOH (Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15 Identity = 55/167 (32.93%), Postives = 91/167 (54.49%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK-----ALGDVGLPATSRPEELTLDDFVKLHNLI 869 KV+AN+P+ I+T VI LL FS +VL++Q+E A R+ + +Y +++ V +Y E E KVP T F P+P+V ++++ K Y V + FF MV + F +RK L+ SL + ++++K A+ ++GL R E+LT+ L N + Sbjct: 123 KVLANLPYYITTPVIMGLLESNITFSLMVLMVQKEVADRMAAAP-GSKDYGALSVAVQYYGEVEIFHKVPPTVFIPRPRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRAIFQQRRKTLKNSLTK-SSEIKLDKGIVTEAIRELGLDPRIRGEKLTIKQMAILSNTL 286
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_THEEB (Ribosomal RNA small subunit methyltransferase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 58/173 (33.53%), Postives = 92/173 (53.18%), Query Frame = -2 Query: 375 GFAKVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878 G KVVANIP+NI+ ++ LL P F ++LL+Q+E RL+ S + Y +++ V F + E VP F P PKVD+ VV L+ P V S + +++ F +RKML +L+ L ++ +AL +G A SR E L+L+D++ L ++ Q+ Sbjct: 93 GCNKVVANIPYNITGPLLGHLLGSIARPRRPAFERLILLVQKEIGDRLMA-SPGSKAYGALSVRVQFLATCEKVCAVPPRAFQPPPKVDSVVVC--LRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALKSLVEPEQVRQALLQLGRDANSRAEALSLEDWLALSEVLRQL 262
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRZT (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRZJ (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain JJA) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRPN (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae GN=rsmA PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |