CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PSEF5 (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = -2
Query:  396 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 878
            G  +VV N+P+NIST +I  LL    +  ++  +LQ+E   RL        ++  ++I V ++   E+ F V    F P PKVD+A+V         +PA    +    +V  AFN +RK LR +L+ L +S EIE A    G+  + RPE+L L  FV+L
Sbjct:  103 GSLRVVGNLPYNISTPLIFHLLQNAGLIRDMHFMLQKEVVERLA-AGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPHAVLPHPA-KDHRLLERIVREAFNQRRKTLRNTLKALLSSAEIEAA----GVDGSLRPEQLDLAAFVRL 257          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_MARAV (Ribosomal RNA small subunit methyltransferase A OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 51/162 (31.48%), Postives = 88/162 (54.32%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            ++V N+P+NIST +I  LL    +  ++  +LQ+E   RL       + Y  + I   ++ + +  F+V    F P PKVD+A+V     +   YPA    K+  ++V +AFN +RK LRK+L  + T  +++     +G+    RPE L L D+V++ +L+
Sbjct:  105 RIVGNLPYNISTPLIFHLLSQSGVVQDMHFMLQKEVVQRLAAVP-GDNNYGRLGIMAQYFCKVQPLFEVGPGAFRPAPKVDSAIVRLVPHKELPYPA-KDLKTLQAVVRTAFNARRKTLRKALAAMVTVEQLQ----SLGINDGLRPENLGLADYVRIADLL 260          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LACSS (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK-----ALGDVGLPATSRPEELTLDDFVKLHNLI 869
            K+VAN+P+ I+T ++  LL  G     +VL++Q+E A R ++ +  +  Y  ++I V  +SE +  F VP+T F PQP VD+A+V F  +Q    P VT  + + F  +V  AF  +RK L  +LQ+     E  K     AL    +  ++R E+L++  F +L + +
Sbjct:  122 KIVANLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAER-IDAAPGSKAYGSLSIAVQLHSEVKLAFIVPKTAFVPQPNVDSAIVEFVGRQE---PLVTVQNQQLFDQLVRGAFAQRRKTLWNNLQNQFGKQEEVKAGLVAALDQADIAPSTRAEQLSIQQFAQLSDCL 286          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_GEOSW (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus sp. (strain WCH70) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 54/169 (31.95%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  375 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH-----LCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 866
            VVAN+P+ ++T +I +LL        +V++LQ+E A RL      T +Y  ++I + +Y+E E    VPRT F PQP VD+AV+   +K+      V     FF +V ++F  +RK +  +L +          +IE+ L +  +    R E LT+++F  L N +  V
Sbjct:  124 VVANLPYYVTTPIIMKLLTDRLPIRGMVVMLQKEVADRLAAKP-GTKDYGSLSIAIQYYTEAETVMTVPRTVFIPQPNVDSAVIRL-IKRKQPPVKVEDEAFFFQVVRASFAQRRKTILNNLVNNLPNGKAMKEQIERVLTETDIDPRRRGETLTMEEFAALSNALQHV 290          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LEGPL (Ribosomal RNA small subunit methyltransferase A OS=Legionella pneumophila (strain Lens) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 48/162 (29.63%), Postives = 91/162 (56.17%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +VV N+P+NIST ++  LL       ++  +LQ+E   R+      T  Y  +++ + ++ E EY F VP   F P+PKVD+A+V     + + + +V +T+   ++V+ AF  +RK L  +L+ + +  +    L D+G+    RPE++++ ++V+L   I
Sbjct:   99 RVVGNLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAAAH-GTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRPKVDSAIVRLTPHRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIISLSQ----LNDLGIDGGKRPEQISVAEYVQLAKFI 254          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_HALOH (Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 55/167 (32.93%), Postives = 91/167 (54.49%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK-----ALGDVGLPATSRPEELTLDDFVKLHNLI 869
            KV+AN+P+ I+T VI  LL     FS +VL++Q+E A R+      + +Y  +++ V +Y E E   KVP T F P+P+V ++++  K      Y  V +   FF MV + F  +RK L+ SL    + ++++K     A+ ++GL    R E+LT+     L N +
Sbjct:  123 KVLANLPYYITTPVIMGLLESNITFSLMVLMVQKEVADRMAAAP-GSKDYGALSVAVQYYGEVEIFHKVPPTVFIPRPRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRAIFQQRRKTLKNSLTK-SSEIKLDKGIVTEAIRELGLDPRIRGEKLTIKQMAILSNTL 286          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_THEEB (Ribosomal RNA small subunit methyltransferase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 58/173 (33.53%), Postives = 92/173 (53.18%), Query Frame = -2
Query:  375 GFAKVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 878
            G  KVVANIP+NI+  ++  LL     P    F  ++LL+Q+E   RL+  S  +  Y  +++ V F +  E    VP   F P PKVD+ VV   L+     P V S +   +++   F  +RKML  +L+ L    ++ +AL  +G  A SR E L+L+D++ L  ++ Q+
Sbjct:   93 GCNKVVANIPYNITGPLLGHLLGSIARPRRPAFERLILLVQKEIGDRLMA-SPGSKAYGALSVRVQFLATCEKVCAVPPRAFQPPPKVDSVVVC--LRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALKSLVEPEQVRQALLQLGRDANSRAEALSLEDWLALSEVLRQL 262          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRZT (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  F E V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRZJ (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain JJA) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  F E V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRPN (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae GN=rsmA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  F E V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_PSEF56.268e-1534.78Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MARAV6.268e-1531.48Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACSS6.268e-1533.14Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_GEOSW6.268e-1531.95Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LEGPL8.186e-1529.63Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_HALOH8.186e-1532.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_THEEB1.069e-1433.53Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRZT1.069e-1433.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRZJ1.069e-1433.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRPN1.069e-1433.13Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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