CX043892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRPJ (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRPI (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRP7 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain 70585) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRP4 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869 KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L +L E + KAL GL + R E L+L +F L Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRGC (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 55/167 (32.93%), Postives = 85/167 (50.90%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R + T Y ++I V +Y + F VPRT F P P VD+A++ +++ V K FF + ++F +RK L +L E +E AL L A R E L L F +L + + Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPAVEVQDEKFFFKVTKASFVHRRKTLWNNLTSYFGKSEEVKEKLENALAKANLVANVRGEALDLVAFARLSDAL 285
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_RHOS5 (Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 53/160 (33.12%), Postives = 85/160 (53.12%), Query Frame = -2 Query: 396 KVVANIPFNISTDVIKQLLPMG--DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 869 ++VAN+P+N+ T+++ + L G + + L+ Q+E A R+V + Y + + + +EP+ +P F P P + +AVV F YPA + S + + AFN +RKMLR SL+ L +IE L D G+ T R EEL+L+ F L Sbjct: 118 RIVANLPYNVGTELLTRWLSSGWPPFWESLTLMFQKEVAERIVARP-GSKAYGRLALLSQWRTEPKIVLTLPPEAFTPPPAIHSAVVHFTRLAGPRYPADAAVLS--RVTAMAFNQRRKMLRSSLKGLAP--DIETVLRDAGIEPTQRAEELSLEAFCAL 272
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PSEPF (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas fluorescens (strain Pf0-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 55/164 (33.54%), Postives = 87/164 (53.05%), Query Frame = -2 Query: 378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869 +VV N+P+NIST +I LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A G+ + RPE+L L FV+L + + + Sbjct: 106 RVVGNLPYNISTPLIFHLLNNAGIIRDMHFMLQKEVVERLA-AGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEAA----GVDGSLRPEQLDLAAFVRLADKLAE 263
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LEGPH (Ribosomal RNA small subunit methyltransferase A OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 48/162 (29.63%), Postives = 91/162 (56.17%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +VV N+P+NIST ++ LL ++ +LQ+E R+ T Y +++ + ++ E EY F VP F P+PKVD+A+V + + + +V +T+ ++V+ AF +RK L +L+ + + + L D+G+ RPE++++ ++V+L I Sbjct: 99 RVVGNLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAAAH-GTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIISLSQ----LNDLGIDGGKRPEQISVAEYVQLAKFI 254
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LEGPC (Ribosomal RNA small subunit methyltransferase A OS=Legionella pneumophila (strain Corby) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 48/162 (29.63%), Postives = 91/162 (56.17%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +VV N+P+NIST ++ LL ++ +LQ+E R+ T Y +++ + ++ E EY F VP F P+PKVD+A+V + + + +V +T+ ++V+ AF +RK L +L+ + + + L D+G+ RPE++++ ++V+L I Sbjct: 99 RVVGNLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAATH-GTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPKPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIISLSQ----LNDLGIDGGKRPEQISVAEYVQLAKFI 254
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LEGPA (Ribosomal RNA small subunit methyltransferase A OS=Legionella pneumophila (strain Paris) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14 Identity = 48/162 (29.63%), Postives = 91/162 (56.17%), Query Frame = -2 Query: 384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869 +VV N+P+NIST ++ LL ++ +LQ+E R+ T Y +++ + ++ E EY F VP F P+PKVD+A+V + + + +V +T+ ++V+ AF +RK L +L+ + + + L D+G+ RPE++++ ++V+L I Sbjct: 99 RVVGNLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAATH-GTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPKPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIISLSQ----LNDLGIDGGKRPEQISVAEYVQLAKFI 254 The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 396
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bpback to top |