CX043892

Overview
NameCX043892
Unique NameCX043892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9103 contig Csv1_Contig9103:104..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRPJ (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  F E V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRPI (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  F E V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRP7 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain 70585) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  F E V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRP4 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKL 869
            KVVAN+P+ I+T ++  L+  G  F E V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++     AV     FF +  ++F  +RK L  +L       E     + KAL   GL  + R E L+L +F  L
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGL 281          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_STRGC (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 55/167 (32.93%), Postives = 85/167 (50.90%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R +     T  Y  ++I V +Y   +  F VPRT F P P VD+A++   +++      V   K FF +  ++F  +RK L  +L       E     +E AL    L A  R E L L  F +L + +
Sbjct:  121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADR-ISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPAVEVQDEKFFFKVTKASFVHRRKTLWNNLTSYFGKSEEVKEKLENALAKANLVANVRGEALDLVAFARLSDAL 285          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_RHOS5 (Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 53/160 (33.12%), Postives = 85/160 (53.12%), Query Frame = -2
Query:  396 KVVANIPFNISTDVIKQLLPMG--DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKL 869
            ++VAN+P+N+ T+++ + L  G    +  + L+ Q+E A R+V     +  Y  + +   + +EP+    +P   F P P + +AVV F       YPA  +  S   + + AFN +RKMLR SL+ L    +IE  L D G+  T R EEL+L+ F  L
Sbjct:  118 RIVANLPYNVGTELLTRWLSSGWPPFWESLTLMFQKEVAERIVARP-GSKAYGRLALLSQWRTEPKIVLTLPPEAFTPPPAIHSAVVHFTRLAGPRYPADAAVLS--RVTAMAFNQRRKMLRSSLKGLAP--DIETVLRDAGIEPTQRAEELSLEAFCAL 272          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_PSEPF (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas fluorescens (strain Pf0-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 55/164 (33.54%), Postives = 87/164 (53.05%), Query Frame = -2
Query:  378 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 869
            +VV N+P+NIST +I  LL    I  ++  +LQ+E   RL        ++  ++I V ++   E+ F V    F P PKVD+A+V         +PA    +    +V  AFN +RK LR +L+ L ++ EIE A    G+  + RPE+L L  FV+L + + +
Sbjct:  106 RVVGNLPYNISTPLIFHLLNNAGIIRDMHFMLQKEVVERLA-AGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEAA----GVDGSLRPEQLDLAAFVRLADKLAE 263          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LEGPH (Ribosomal RNA small subunit methyltransferase A OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 48/162 (29.63%), Postives = 91/162 (56.17%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +VV N+P+NIST ++  LL       ++  +LQ+E   R+      T  Y  +++ + ++ E EY F VP   F P+PKVD+A+V     + + + +V +T+   ++V+ AF  +RK L  +L+ + +  +    L D+G+    RPE++++ ++V+L   I
Sbjct:   99 RVVGNLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAAAH-GTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIISLSQ----LNDLGIDGGKRPEQISVAEYVQLAKFI 254          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LEGPC (Ribosomal RNA small subunit methyltransferase A OS=Legionella pneumophila (strain Corby) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 48/162 (29.63%), Postives = 91/162 (56.17%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +VV N+P+NIST ++  LL       ++  +LQ+E   R+      T  Y  +++ + ++ E EY F VP   F P+PKVD+A+V     + + + +V +T+   ++V+ AF  +RK L  +L+ + +  +    L D+G+    RPE++++ ++V+L   I
Sbjct:   99 RVVGNLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAATH-GTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPKPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIISLSQ----LNDLGIDGGKRPEQISVAEYVQLAKFI 254          
BLAST of CX043892 vs. ExPASy Swiss-Prot
Match: RSMA_LEGPA (Ribosomal RNA small subunit methyltransferase A OS=Legionella pneumophila (strain Paris) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 48/162 (29.63%), Postives = 91/162 (56.17%), Query Frame = -2
Query:  384 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 869
            +VV N+P+NIST ++  LL       ++  +LQ+E   R+      T  Y  +++ + ++ E EY F VP   F P+PKVD+A+V     + + + +V +T+   ++V+ AF  +RK L  +L+ + +  +    L D+G+    RPE++++ ++V+L   I
Sbjct:   99 RVVGNLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAATH-GTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPKPKVDSAIVRLTPYRVSPFESV-NTEKLENIVAKAFAMRRKTLTNNLKGIISLSQ----LNDLGIDGGKRPEQISVAEYVQLAKFI 254          
The following BLAST results are available for this feature:
BLAST of CX043892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 396
Match NameE-valueIdentityDescription
RSMA_STRPJ1.069e-1433.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRPI1.069e-1433.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRP71.069e-1433.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRP41.069e-1433.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRGC1.069e-1432.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHOS51.069e-1433.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PSEPF1.069e-1433.54Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LEGPH1.069e-1429.63Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LEGPC1.069e-1429.63Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LEGPA1.069e-1429.63Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043892 ID=CX043892; Name=CX043892; organism=Citrus sinensis; type=EST; length=879bp
TTTTGCTAAATGCATTCGGAAAACTAACACAAATAAATGTTTATTCTAAG
TTCATACATTGGGCTATCAAAGTTGCTTCCTCAAATACCTCTATGTTGTA
AGATTAATTATCACTGTACAGTTTGCTTATTACACAGCTCTTACAATGCA
CCTCCATCCTGTGGTGAACTCTCAAAGTTGGTAATGGAGAAAGGAGAAGA
ACCTAGACCTGCATTTTTTTTAAGAGAACCACTGCCGACTGCCGTAACTA
ATCAGATTGTGCTCCATAAATAATGTATATTCCGTTGACGGTAATGTGAT
TGGAAATTTGTAATCTGCAGCAGCCTGTACAAGGTAGGAGAGTCTAAGGT
GTCTGTATACTTGAACAAACACTACACCTGTACAATTAAATTATGCAGCT
TCACGAAATCATCCAACGTTAGCTCCTCTGGTCTTGAGGTAGCTGGAAGT
CCAACATCTCCAAGAGCTTTCTCGATCTCAAGGGATGTGCATAAGTGCTG
GAGTGATTTCCTCAACATTTTTCGTTTTCCATTAAATGCAGAACTGACCA
TTGAAAAGAAGCTCTTTGTGGAGGTAACTGCAGGATAATCTGTAGCTTGC
TTCAGCTTGAATGTAACAACAGCTGCATCAACTTTGGGCTGAGGGAAAAA
GTTTGTCCTTGGGACTTTGAATTTGTATTCAGGCTCTGAATAAAAATTGA
CAAAGATATTGATGGGTCGGTACTCAGATGTACGCAAGGAAGGTTCTACC
AAGCGCAAAGCTGTTTCTTCCTGAAGTAAGAGAACAACTTCAGAAAAAAT
GTCACCCATAGGAAGAAGTTGCTTGATTACATCTGTACTGATATTAAAGG
GTATATTGGCAACCACCTTAGCAAACCCT
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