CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23
Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = -1
Query:  250 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 756
            T   + D P+  R+PRG+G     P +    P+EIGKG +   G RVA+L +G  VQ   LA  M  ++ +  TV D RF KPLD  L+R+LA  HE+L+T+EE +V GG GS V  FL   G+    + L  + LPD Y++H  P++ L E GL +  I   V   L R
Sbjct:  467 TTGYLFDGPAAVRYPRGSGPNH--PIDPDLQPVEIGKGVVRRRGGRVALLVFG--VQ---LAEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEA8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23
Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = -1
Query:  250 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 756
            T   + D P+  R+PRG+G     P +    P+EIGKG +   G RVA+L +G  VQ   LA  M  ++ +  TV D RF KPLD  L+R+LA  HE+L+T+EE +V GG GS V  FL   G+    + L  + LPD Y++H  P++ L E GL +  I   V   L R
Sbjct:  467 TTGYLFDGPAAVRYPRGSGPNH--PIDPDLQPVEIGKGVVRRRGGRVALLVFG--VQ---LAEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23
Identity = 67/156 (42.95%), Postives = 91/156 (58.33%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRGNG  AV+  + +  P+EIGKG +  +G + A L +G  VQ   LA  +  ++ I  TV D RF KPLD  L+R++A  HE+L+TVEE ++ GG G+ V  FL    IL   L L    LPD Y++H  PA  L E GL    I A+V
Sbjct:  478 PAAVRYPRGNGPNAVIEKDLE--PIEIGKGIVRRQGSKTAFLVFG--VQ---LAEALKVAEKIDATVVDMRFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEAGIEASV 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23
Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = -1
Query:  253 DDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 741
            +D P   R PRG+G G  L       PL+IG+G IL +GD + IL YGS+V   V  A +LK   IS TV +ARF +PLD  LI  LA     ++T+EEG++ GGFGS V    +   +L    +L    +PD+ +DH SP    E  GL+   +S +++   G
Sbjct:  467 NDGPCALRIPRGSGEGVTLMEEG-WEPLKIGRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFGSAVVESFSDQDLLVPTFRLG---IPDKLVDHASPQQSKESLGLTPSQMSKSIMKRYG 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.896e-23
Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 732
            P+  R+PRG G  AV+  N    P+EIGKG +  +G  VAIL +G  VQ   LA  ++ ++ +  TV D RF KPLD  L+R+ A  HE+L+T+EE +V GG G+ V  FL  + IL   L L    LPD Y++H  PA  L E GL +  I A +   L+L+G
Sbjct:  478 PAAVRYPRGTGPNAVIEANLD--PVEIGKGVVRRQGQGVAILVFG--VQ---LAEALVVAEKLDATVIDMRFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDVYVEHAKPAQMLAECGLDAEGIEAAINERLALIG 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEWM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            M+ T    +D P+  R+PRG+  GA  P   + T L IGKG I  +G +VAIL +G++     LA+ +   + +  TVAD RF KPLD +LI++LAN H++L+TVEE ++ GG GS V   L L   L  P+ +  + LPD +I HG   + + E  L +  I   + S L
Sbjct:  460 MLYTGYCYNDGPTAVRYPRGSATGA--PQIEEMTALPIGKGLIKRQGQKVAILNFGTL-----LASVLTAGESLDATVADMRFVKPLDVELIKELANSHDVLVTVEENAIMGGAGSGV---LELLQQLKQPMPVLQLGLPDEFIKHGDSGEIIAELKLDAAGILEQIESYL 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALEJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 74/174 (42.53%), Postives = 97/174 (55.75%), Query Frame = -1
Query:  253 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRI-----LMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 756
            T A   + P+  R+PRG G G       K  P  +GKG +        G RVA LG+GS+V   + AA     Q +  +VAD RF KPLD +L+++LA EH  L+TVEEGSV GG GS V   L  +GI D P+ +  + LPDR+IDHG PA  L + GL +  I  +V    G
Sbjct:  462 TTAFHQNCPTAVRYPRGAGQGVATEAVLKDVP--VGKGVMRRTGGARSGQRVAFLGFGSMVHPALGAA-----QALDASVADMRFVKPLDVELVKRLAEEHNYLVTVEEGSVMGGAGSAVLEALAEAGI-DIPVLV--LGLPDRFIDHGDPALLLSQCGLDAAGIERSVRERFG 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 66/162 (40.74%), Postives = 95/162 (58.64%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            P+  R+PRG G  A  P +    PLEIGKG +  +G+++A+L +G  VQ   LA  M  ++ I+ TV D RF KPLD  L+ +LA  HE+L+T+EE ++ GG G+ V  FL    +L   L L    LPD Y++H  PA  L E GL +  I A+V + + +
Sbjct:  477 PAAVRYPRGTGPNA--PISGDLQPLEIGKGVVRRQGEKIALLVFG--VQ---LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAK 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRG G  A  P +    PLEIGKG +  +G++VA+L +G  VQ   LA  M  ++ I+ TV D RF KPLD  L+ +LA  HE+L+T+EE ++ GG G+ V  FL    +L   L L    LPD Y++H  PA  L E GL +  I A+V
Sbjct:  477 PAAVRYPRGTGPNA--PISGDLQPLEIGKGVVRRQGEKVALLVFG--VQ---LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASV 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEF5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 70/175 (40.00%), Postives = 100/175 (57.14%), Query Frame = -1
Query:  253 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 765
            M+ +   + + P+  R+PRG G  A  P +    P+EIGKG I  +G +VA+L +G  VQ   LA  +  ++ +  TV D RF KPLD  L+R++A+ HE+L+T+EE ++ GG G  V  +L    IL   L L    LPD Y++H  PA  L E GL    I A+V   L+LLG
Sbjct:  467 MMLSTGHLYNGPAAVRYPRGTGPNA--PIDKSLEPIEIGKGVIRRQGRQVALLVFG--VQ---LAEALQVAEKLDATVVDMRFVKPLDEALVREIASSHELLVTIEENAIMGGAGGAVSEYLARENILKPILHLG---LPDAYVEHAKPAQMLAECGLDEAGIEASVRQRLALLG 631          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_PSEAB2.284e-2340.591-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEA82.284e-2340.591-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEFS2.983e-2342.951-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PROM42.983e-2339.631-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PSESM3.896e-2342.681-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_SHEWM5.088e-2339.181-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_RALEJ5.088e-2342.531-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_PSEPG5.088e-2340.741-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEP15.088e-2342.951-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEF55.088e-2340.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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