CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23 Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = -1 Query: 250 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 756 T + D P+ R+PRG+G P + P+EIGKG + G RVA+L +G VQ LA M ++ + TV D RF KPLD L+R+LA HE+L+T+EE +V GG GS V FL G+ + L + LPD Y++H P++ L E GL + I V L R Sbjct: 467 TTGYLFDGPAAVRYPRGSGPNH--PIDPDLQPVEIGKGVVRRRGGRVALLVFG--VQ---LAEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEA8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=dxs PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23 Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = -1 Query: 250 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 756 T + D P+ R+PRG+G P + P+EIGKG + G RVA+L +G VQ LA M ++ + TV D RF KPLD L+R+LA HE+L+T+EE +V GG GS V FL G+ + L + LPD Y++H P++ L E GL + I V L R Sbjct: 467 TTGYLFDGPAAVRYPRGSGPNH--PIDPDLQPVEIGKGVVRRRGGRVALLVFG--VQ---LAEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23 Identity = 67/156 (42.95%), Postives = 91/156 (58.33%), Query Frame = -1 Query: 268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732 P+ R+PRGNG AV+ + + P+EIGKG + +G + A L +G VQ LA + ++ I TV D RF KPLD L+R++A HE+L+TVEE ++ GG G+ V FL IL L L LPD Y++H PA L E GL I A+V Sbjct: 478 PAAVRYPRGNGPNAVIEKDLE--PIEIGKGIVRRQGSKTAFLVFG--VQ---LAEALKVAEKIDATVVDMRFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEAGIEASV 623
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23 Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = -1 Query: 253 DDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 741 +D P R PRG+G G L PL+IG+G IL +GD + IL YGS+V V A +LK IS TV +ARF +PLD LI LA ++T+EEG++ GGFGS V + +L +L +PD+ +DH SP E GL+ +S +++ G Sbjct: 467 NDGPCALRIPRGSGEGVTLMEEG-WEPLKIGRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFGSAVVESFSDQDLLVPTFRLG---IPDKLVDHASPQQSKESLGLTPSQMSKSIMKRYG 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.896e-23 Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = -1 Query: 253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 732 P+ R+PRG G AV+ N P+EIGKG + +G VAIL +G VQ LA ++ ++ + TV D RF KPLD L+R+ A HE+L+T+EE +V GG G+ V FL + IL L L LPD Y++H PA L E GL + I A + L+L+G Sbjct: 478 PAAVRYPRGTGPNAVIEANLD--PVEIGKGVVRRQGQGVAILVFG--VQ---LAEALVVAEKLDATVIDMRFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDVYVEHAKPAQMLAECGLDAEGIEAAINERLALIG 631
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEWM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxs PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23 Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = -1 Query: 256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765 M+ T +D P+ R+PRG+ GA P + T L IGKG I +G +VAIL +G++ LA+ + + + TVAD RF KPLD +LI++LAN H++L+TVEE ++ GG GS V L L L P+ + + LPD +I HG + + E L + I + S L Sbjct: 460 MLYTGYCYNDGPTAVRYPRGSATGA--PQIEEMTALPIGKGLIKRQGQKVAILNFGTL-----LASVLTAGESLDATVADMRFVKPLDVELIKELANSHDVLVTVEENAIMGGAGSGV---LELLQQLKQPMPVLQLGLPDEFIKHGDSGEIIAELKLDAAGILEQIESYL 620
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALEJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=dxs PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23 Identity = 74/174 (42.53%), Postives = 97/174 (55.75%), Query Frame = -1 Query: 253 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRI-----LMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 756 T A + P+ R+PRG G G K P +GKG + G RVA LG+GS+V + AA Q + +VAD RF KPLD +L+++LA EH L+TVEEGSV GG GS V L +GI D P+ + + LPDR+IDHG PA L + GL + I +V G Sbjct: 462 TTAFHQNCPTAVRYPRGAGQGVATEAVLKDVP--VGKGVMRRTGGARSGQRVAFLGFGSMVHPALGAA-----QALDASVADMRFVKPLDVELVKRLAEEHNYLVTVEEGSVMGGAGSAVLEALAEAGI-DIPVLV--LGLPDRFIDHGDPALLLSQCGLDAAGIERSVRERFG 625
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=dxs PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23 Identity = 66/162 (40.74%), Postives = 95/162 (58.64%), Query Frame = -1 Query: 250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732 P+ R+PRG G A P + PLEIGKG + +G+++A+L +G VQ LA M ++ I+ TV D RF KPLD L+ +LA HE+L+T+EE ++ GG G+ V FL +L L L LPD Y++H PA L E GL + I A+V + + + Sbjct: 477 PAAVRYPRGTGPNA--PISGDLQPLEIGKGVVRRQGEKIALLVFG--VQ---LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAK 628
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23 Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = -1 Query: 268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732 P+ R+PRG G A P + PLEIGKG + +G++VA+L +G VQ LA M ++ I+ TV D RF KPLD L+ +LA HE+L+T+EE ++ GG G+ V FL +L L L LPD Y++H PA L E GL + I A+V Sbjct: 477 PAAVRYPRGTGPNA--PISGDLQPLEIGKGVVRRQGEKVALLVFG--VQ---LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASV 622
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEF5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxs PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23 Identity = 70/175 (40.00%), Postives = 100/175 (57.14%), Query Frame = -1 Query: 253 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 765 M+ + + + P+ R+PRG G A P + P+EIGKG I +G +VA+L +G VQ LA + ++ + TV D RF KPLD L+R++A+ HE+L+T+EE ++ GG G V +L IL L L LPD Y++H PA L E GL I A+V L+LLG Sbjct: 467 MMLSTGHLYNGPAAVRYPRGTGPNA--PIDKSLEPIEIGKGVIRRQGRQVALLVFG--VQ---LAEALQVAEKLDATVVDMRFVKPLDEALVREIASSHELLVTIEENAIMGGAGGAVSEYLARENILKPILHLG---LPDAYVEHAKPAQMLAECGLDEAGIEASVRQRLALLG 631 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |