CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACLD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dxs PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23 Identity = 64/168 (38.10%), Postives = 94/168 (55.95%), Query Frame = -1 Query: 280 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL----TLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 768 HMV TA DD P RFPRGNG+G + K P IG +L G IL +G+ + + AA L+ + SV V +ARF KPLD ++++++ NE ++T+EE + GGFGS + F + S I+D M +PD++I+HGS A LEE G++ + Sbjct: 456 HMVNTAVKYDDGPIAMRFPRGNGLGVKMDKELKTIP--IGTWEVLRPGTDAVILTFGTTIPMALAAAEELQKEGRSVRVVNARFIKPLDENMLKEILNEGLPILTIEEAVLQGGFGSSILEFAHEHQSYSPIID------RMGIPDQFIEHGSVAKLLEEIGMTKEDV 615
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_VIBSL (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio splendidus (strain LGP32) GN=dxs PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23 Identity = 65/168 (38.69%), Postives = 101/168 (60.12%), Query Frame = -1 Query: 250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732 PS R+PRGNG+G + ++ T LEIGKGRI+ E G +VAIL +G+ ++ + A+ I TVAD RF KPLD LI+QLA +H++L+T+EE ++ GG G+ V FL +L + + ++ LPD++I G+ + EE GL ++ I ++ L + Sbjct: 470 PSAVRYPRGNGMGTEI--QSEFTALEIGKGRIVRESKKAKDGSKVAILSFGTFLESALQTADA-----IDATVADMRFVKPLDEALIKQLAADHDVLVTIEENAIAGGAGAGVIEFLMQEKLL---MPVLNLGLPDKFIAQGTQDELHEELGLDAKGIEKSISDYLAK 627
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23 Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = -1 Query: 265 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 765 MV T D R+PRGNG G +P +G + IGKG IL GD V ILGYGS+V + A +L ++ TV +ARF KPLDT+LI LA ++T+EEG +GGFGS V L + +L L+L +PD+ +DH P + + GL+ ++ +L Sbjct: 460 MVLTGIKHTDGAIAMRYPRGNGYG--VPLMEEGWEAITIGKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVTEALMDNNVLVPVLRLG---VPDKLVDHAKPDESKADLGLTPSQMAERIL 623
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23 Identity = 68/170 (40.00%), Postives = 96/170 (56.47%), Query Frame = -1 Query: 250 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 756 T + D P+ R+PRG+G P + P+EIGKG + G +VA+L +G VQ LA M ++ + TVAD RF KPLD L+R+LA HE+L+++EE +V GG GS V FL G+ + L + LPD Y++H P++ L E GL + I V L R Sbjct: 467 TTGYLFDGPAAVRYPRGSGPNH--PIDPDLQPVEIGKGVVRRRGGKVALLVFG--VQ---LAEAMKVAEGLDATVADMRFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23 Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = -1 Query: 268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750 A + D P+ R+PRG G G T L +G+G + +G +AIL +GS+V + AA+ L + +VAD RF KPLDT LIRQLA HE+L+TVEE V GG GS V L +GI + + ++ LPD Y++HG PA L + GL + I +V Sbjct: 460 AFLHDGPTAVRYPRGTGPGC--EPVAAMTALPLGQGTLRRQGKGIAILAFGSMVHPALAAADQLDA-----SVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPALLLADCGLDTAGIVRSV 611
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEU2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dxs PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22 Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = -1 Query: 253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 732 P+ R+PRG G AV+ + PLEIGKG + +G VAIL +G VQ LA ++ ++ + TV D RF KPLD L+ + A HE+L+T+EE +V GG G+ V FL + IL L L LPD Y++H PA L E GL ++ I A + L+L+G Sbjct: 477 PAAVRYPRGTGPNAVIEASLD--PLEIGKGVVRRQGQGVAILAFG--VQ---LAEALVVAEKLDATVIDMRFVKPLDEALVSEAAANHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDVYVEHAKPAQMLTECGLDAQGIEAAINERLALIG 630
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22 Identity = 65/165 (39.39%), Postives = 92/165 (55.76%), Query Frame = -1 Query: 250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 732 P+ R+PRG G A + + + P+EIGKG + +G +VA+L +G + + + A L + TV D RF KP+D L+R++AN H++L+T+EE ++ GG G V FL IL L L LPD Y++H PA L E GL I A V L LL R Sbjct: 478 PAAVRYPRGTGPNATIEKDLE--PIEIGKGVVRRQGSKVALLVFGVQMAEALKVAETLDA-----TVVDMRFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEVGIEAAVRERLELLNR 632
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURXL (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=dxs PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22 Identity = 70/167 (41.92%), Postives = 93/167 (55.69%), Query Frame = -1 Query: 268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750 A+ P+ R+PRG G G + T L +GKG I E G R+AIL +G++V + AA L + TVA+ RF KPLD DL+RQLA H+ ++TVEEG V GG GS L SG+ L+L LPDR+IDHG PA L GL + I+ ++ Sbjct: 459 ALQQPNPTAVRYPRGAGTGVATI--KQMTALPLGKGEIRRETSQPAGKRIAILAFGTMVAPSLAAAEQLDA-----TVANMRFVKPLDADLVRQLAETHDAIVTVEEGCVMGGAGSACVEALLASGVTRPVLQLG---LPDRFIDHGDPAKLLAACGLDAVGITKSI 615
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=dxs PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22 Identity = 64/176 (36.36%), Postives = 97/176 (55.11%), Query Frame = -1 Query: 244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768 HMV TA ++ P RFPRGNG+G + K P IG +L G IL +G+ ++ + AA L+ + +SV V +ARF KP+D +++ + NE ++T+EE + GGFGS + + G+ P+ M +PDR+I+HGS LEE GL+ + + LL PK Sbjct: 456 HMVNTALNYEEGPIAMRFPRGNGLGVKMDKELKTIP--IGTWEVLRPGKDAVILTFGTTIEMALEAAEELQKEGLSVRVVNARFIKPIDKQMMKAILNEGLPILTIEEAVLEGGFGSTILEYAHDLGMYHTPID--RMGIPDRFIEHGSVTALLEEIGLTKAEVMNRI-KLLMPPK 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22 Identity = 63/167 (37.72%), Postives = 93/167 (55.69%), Query Frame = -1 Query: 268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765 M+ T D R+PRG+GIGA L + PL IGKG IL GD + ++GYG++V + A +L IS TV +ARF KPLD++LI LA + + T EEG +GGFGS VC L +L + ++ + D +DH +PA+ GL+ ++ ++ Sbjct: 460 MLVTGIEYTDGAIAMRYPRGSGIGAPLMEDG-WEPLPIGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHDVL---VPVKRFGIGDVLVDHATPAESKAAHGLTPAQMAESI 622 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |