CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACLD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 64/168 (38.10%), Postives = 94/168 (55.95%), Query Frame = -1
Query:  280 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL----TLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 768
            HMV TA   DD P   RFPRGNG+G  +    K  P  IG   +L  G    IL +G+ +   + AA  L+ +  SV V +ARF KPLD ++++++ NE   ++T+EE  + GGFGS +  F     + S I+D       M +PD++I+HGS A  LEE G++   +
Sbjct:  456 HMVNTAVKYDDGPIAMRFPRGNGLGVKMDKELKTIP--IGTWEVLRPGTDAVILTFGTTIPMALAAAEELQKEGRSVRVVNARFIKPLDENMLKEILNEGLPILTIEEAVLQGGFGSSILEFAHEHQSYSPIID------RMGIPDQFIEHGSVAKLLEEIGMTKEDV 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_VIBSL (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio splendidus (strain LGP32) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23
Identity = 65/168 (38.69%), Postives = 101/168 (60.12%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            PS  R+PRGNG+G  +   ++ T LEIGKGRI+ E      G +VAIL +G+ ++  +  A+      I  TVAD RF KPLD  LI+QLA +H++L+T+EE ++ GG G+ V  FL    +L   + + ++ LPD++I  G+  +  EE GL ++ I  ++   L +
Sbjct:  470 PSAVRYPRGNGMGTEI--QSEFTALEIGKGRIVRESKKAKDGSKVAILSFGTFLESALQTADA-----IDATVADMRFVKPLDEALIKQLAADHDVLVTIEENAIAGGAGAGVIEFLMQEKLL---MPVLNLGLPDKFIAQGTQDELHEELGLDAKGIEKSISDYLAK 627          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23
Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = -1
Query:  265 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 765
            MV T     D     R+PRGNG G  +P   +G   + IGKG IL  GD V ILGYGS+V   +  A +L    ++ TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L  + +L   L+L    +PD+ +DH  P +   + GL+   ++  +L
Sbjct:  460 MVLTGIKHTDGAIAMRYPRGNGYG--VPLMEEGWEAITIGKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVTEALMDNNVLVPVLRLG---VPDKLVDHAKPDESKADLGLTPSQMAERIL 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23
Identity = 68/170 (40.00%), Postives = 96/170 (56.47%), Query Frame = -1
Query:  250 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 756
            T   + D P+  R+PRG+G     P +    P+EIGKG +   G +VA+L +G  VQ   LA  M  ++ +  TVAD RF KPLD  L+R+LA  HE+L+++EE +V GG GS V  FL   G+    + L  + LPD Y++H  P++ L E GL +  I   V   L R
Sbjct:  467 TTGYLFDGPAAVRYPRGSGPNH--PIDPDLQPVEIGKGVVRRRGGKVALLVFG--VQ---LAEAMKVAEGLDATVADMRFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23
Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A + D P+  R+PRG G G         T L +G+G +  +G  +AIL +GS+V   + AA+ L +     +VAD RF KPLDT LIRQLA  HE+L+TVEE  V GG GS V   L  +GI    + + ++ LPD Y++HG PA  L + GL +  I  +V
Sbjct:  460 AFLHDGPTAVRYPRGTGPGC--EPVAAMTALPLGQGTLRRQGKGIAILAFGSMVHPALAAADQLDA-----SVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPALLLADCGLDTAGIVRSV 611          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEU2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dxs PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 732
            P+  R+PRG G  AV+  +    PLEIGKG +  +G  VAIL +G  VQ   LA  ++ ++ +  TV D RF KPLD  L+ + A  HE+L+T+EE +V GG G+ V  FL  + IL   L L    LPD Y++H  PA  L E GL ++ I A +   L+L+G
Sbjct:  477 PAAVRYPRGTGPNAVIEASLD--PLEIGKGVVRRQGQGVAILAFG--VQ---LAEALVVAEKLDATVIDMRFVKPLDEALVSEAAANHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDVYVEHAKPAQMLTECGLDAQGIEAAINERLALIG 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22
Identity = 65/165 (39.39%), Postives = 92/165 (55.76%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 732
            P+  R+PRG G  A +  + +  P+EIGKG +  +G +VA+L +G  + + +  A  L +     TV D RF KP+D  L+R++AN H++L+T+EE ++ GG G  V  FL    IL   L L    LPD Y++H  PA  L E GL    I A V   L LL R
Sbjct:  478 PAAVRYPRGTGPNATIEKDLE--PIEIGKGVVRRQGSKVALLVFGVQMAEALKVAETLDA-----TVVDMRFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEVGIEAAVRERLELLNR 632          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BURXL (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=dxs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22
Identity = 70/167 (41.92%), Postives = 93/167 (55.69%), Query Frame = -1
Query:  268 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 750
            A+    P+  R+PRG G G       + T L +GKG I  E     G R+AIL +G++V   + AA  L +     TVA+ RF KPLD DL+RQLA  H+ ++TVEEG V GG GS     L  SG+    L+L    LPDR+IDHG PA  L   GL +  I+ ++
Sbjct:  459 ALQQPNPTAVRYPRGAGTGVATI--KQMTALPLGKGEIRRETSQPAGKRIAILAFGTMVAPSLAAAEQLDA-----TVANMRFVKPLDADLVRQLAETHDAIVTVEEGCVMGGAGSACVEALLASGVTRPVLQLG---LPDRFIDHGDPAKLLAACGLDAVGITKSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=dxs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22
Identity = 64/176 (36.36%), Postives = 97/176 (55.11%), Query Frame = -1
Query:  244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768
            HMV TA   ++ P   RFPRGNG+G  +    K  P  IG   +L  G    IL +G+ ++  + AA  L+ + +SV V +ARF KP+D  +++ + NE   ++T+EE  + GGFGS +  +    G+   P+    M +PDR+I+HGS    LEE GL+   +   +  LL  PK
Sbjct:  456 HMVNTALNYEEGPIAMRFPRGNGLGVKMDKELKTIP--IGTWEVLRPGKDAVILTFGTTIEMALEAAEELQKEGLSVRVVNARFIKPIDKQMMKAILNEGLPILTIEEAVLEGGFGSTILEYAHDLGMYHTPID--RMGIPDRFIEHGSVTALLEEIGLTKAEVMNRI-KLLMPPK 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22
Identity = 63/167 (37.72%), Postives = 93/167 (55.69%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T     D     R+PRG+GIGA L  +    PL IGKG IL  GD + ++GYG++V   +  A +L    IS TV +ARF KPLD++LI  LA +   + T EEG  +GGFGS VC  L    +L   + ++   + D  +DH +PA+     GL+   ++ ++
Sbjct:  460 MLVTGIEYTDGAIAMRYPRGSGIGAPLMEDG-WEPLPIGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHDVL---VPVKRFGIGDVLVDHATPAESKAAHGLTPAQMAESI 622          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_BACLD5.088e-2338.101-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_VIBSL6.645e-2338.691-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_TRIEI6.645e-2339.641-deoxy-D-xylulose-5-phosphate synthase OS=Trichod... [more]
DXS_PSEA76.645e-2340.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_LARHH8.679e-2341.981-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_PSEU21.134e-2242.071-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEPF1.480e-2239.391-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_BURXL1.480e-2241.921-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BACA21.480e-2236.361-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_SYNP21.933e-2237.721-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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