CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHLTE (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlorobium tepidum GN=dxs PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22
Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = -1
Query:  265 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 768
            +M+ TA      P   R+PRG+G GA L  + + TP+ +G+GRIL +G  VA+LG G++  + +  A +L++  +   V D RF KPLDT++I   A+    ++T+EE S +GGFGS+V ++L  +      +K  S  LPD ++ HGS  +   E GL +  +S  +L
Sbjct:  465 NMLYTALYDIKGPVAIRYPRGSGSGATL--HKEFTPVPVGRGRILRDGKSVALLGIGTMSNRALETAALLEAAGLDPLVCDMRFLKPLDTEIIDMAASRCTHIVTIEENSIIGGFGSNVVNYLHHA---HPGIKCISFGLPDAFVTHGSMDELYREVGLDAESLSGKIL 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=dxs PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22
Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = -1
Query:  241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768
            HM+ T    DD P   R+PRGNG G  +  +    P  IGK  +L EG   AIL +G+++     A   LK    ++ + +A   KPLD  L+  LA E   L+T+EE  + GGFGS V  F    G+    ++L+ M +PD +++HGS ++  +E GL+   I+ T++S+L + ++
Sbjct:  455 HMLYTGICYDDGPIAIRYPRGNGTGVKMDASLSRLP--IGKWNVLQEGTDAAILTFGTMIPVAEKALAQLKQAGYNIRLINANSVKPLDEKLLEALAEEELPLLTIEESVLQGGFGSAVLEFYNEKGM---HVELKRMGIPDYFVEHGSVSELYQEVGLTPERIADTLISMLPQKRK 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M+ T    +D P+  R+PRG+  GA         P  IGKG +  +G ++AIL +G+ +  C++AA  L +     TVAD RF KPLD +L+++LA  H++L+TVEE ++ GG GS V   L L   L  P  +  + LPD +I HG+P +   E GL +  I   +
Sbjct:  460 MLYTGYCYNDGPTAVRYPRGSATGAKQVETMTAMP--IGKGLLKRQGQKIAILNFGTTLASCLVAAEALDA-----TVADMRFVKPLDVELVKELAANHDVLVTVEENAIMGGAGSGV---LELLQTLKMPKPVLLIGLPDEFIKHGAPEEITSELGLDAAGIQKQI 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 70/166 (42.17%), Postives = 96/166 (57.83%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGD-----RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732
            PS  R+PRG+G GA +       P  +GKG +  EG      RV  L +GS+V   + AA  L +      VAD RF KPLD +L+++LA E++ L+TVEEGSV GG GS V   L  +GI D P  + ++ LPDR++DHG PA  L++ GL +  I  +V    G
Sbjct:  470 PSAVRYPRGSGPGAAIAAELTTVP--VGKGVMRREGGARAGHRVGFLAFGSMVHPALGAAEALDA-----AVADMRFVKPLDVELVKRLAAENDYLVTVEEGSVMGGAGSAVLEALAEAGI-DKP--VLTLGLPDRFVDHGDPAYLLQQCGLDAAGIERSVRERFG 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NITEU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas europaea GN=dxs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 60/158 (37.97%), Postives = 92/158 (58.23%), Query Frame = -1
Query:  268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738
            D P+  R+PRG+G G  +    +  PL  GKG I  +G ++A+L +GS++  C+ A +     ++  TV + RF KPLD +L+  LA EHE+L+T+EE ++ GG GS V   L+    LD  ++L  + LPD +ID G PA  L + GL    I  ++
Sbjct:  461 DTPAAVRYPRGSGPGVQIQQEMQTIPL--GKGEIRRQGKQIALLAFGSMLTPCLEAGD-----ELDATVVNMRFVKPLDQELVATLAAEHELLVTIEENTIMGGAGSAVMESLS---SLDKNVRLLQLGLPDSFIDQGDPAHMLSDCGLDKAGIIQSI 608          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_METPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylibium petroleiphilum (strain PM1) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 67/177 (37.85%), Postives = 98/177 (55.37%), Query Frame = -1
Query:  241 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 756
            TAA     P   R+PRG G+G  +   ++ T L  G+G +  E    G R+AIL +G+++   + AA  L +     TVA+ RF KPLDT+L+  LA  HE L+TVEEG + GG GS V   L  +G+    L + ++ LPD +++HG PA  L + GL +  I  ++L   G   E
Sbjct:  457 TAAFEQQHPVAVRYPRGAGVGVAV--QSELTALPWGRGELRREARGGGRRIAILAFGTLLYPALAAAEKLDA-----TVANMRFIKPLDTELVLSLARSHEALVTVEEGCLQGGAGSAVLEALQAAGV---NLPVLTLGLPDEFVEHGDPAKLLAQLGLDAAGIEQSILKRFGAKLE 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DECAR (1-deoxy-D-xylulose-5-phosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 68/167 (40.72%), Postives = 92/167 (55.09%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            M++TA  ID  PS  R+PRG+G G +     K   L +GKG I   G  +A+L +GS+V   V A      +++  TVA+ RF KPLD DLI +LA  H +L+++EE +V GG GS +   L   G+    L+L    LPDR+IDHG     L E GL    I   V
Sbjct:  456 MLSTAMTIDG-PSMVRYPRGSGTGTI--PEAKLDTLPVGKGDIRRRGKDIALLAFGSLVAAAVAAG-----EELDATVANMRFIKPLDADLIVELAGNHSLLVSIEENAVIGGAGSEIERVLAERGLQVPVLRLG---LPDRFIDHGEQGQLLAELGLDKEGIVRAV 611          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BORPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella parapertussis GN=dxs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732
            P+  R+PRG G GA +       PL  GKG +  EG R+AILG+G++VQ  + AA       I  TVAD RF KPLD +L+ +LA  H+ L+TVEE ++ GG GS V   L  +G+    L +  + LPD +IDHG  A  L   GL +  I   + +  G
Sbjct:  466 PASVRYPRGAGCGAAVGEGLATVPL--GKGLVRREGRRIAILGFGTLVQAALGAAGQ-----IDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAIRARFG 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BORBR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella bronchiseptica GN=dxs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732
            P+  R+PRG G GA +       PL  GKG +  EG R+AILG+G++VQ  + AA       I  TVAD RF KPLD +L+ +LA  H+ L+TVEE ++ GG GS V   L  +G+    L +  + LPD +IDHG  A  L   GL +  I   + +  G
Sbjct:  466 PASVRYPRGAGCGAAVGEGLATVPL--GKGLVRREGRRIAILGFGTLVQAALGAAGQ-----IDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAIRARFG 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxs PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = -1
Query:  253 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 738
            D P   RFPRGNGIG  LP     + L IGK   L +GD + +L YGS+V   +  A +L    IS TV +ARF KPLD +LI  LA +   ++T EEG + GGFGS +   L      D  + +  + +PD  ++H SP +  +E GL+ R ++  +L   G
Sbjct:  468 DGPIAMRFPRGNGIGVPLPEEGWES-LPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAH---DLQVPVLPIGVPDLLVEHASPDESKQELGLTPRQMADRILEKFG 626          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_CHLTE1.933e-2236.691-deoxy-D-xylulose-5-phosphate synthase OS=Chlorob... [more]
DXS_BACSK1.933e-2235.031-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_SHEHH3.298e-2237.721-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_RALEH3.298e-2242.171-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_NITEU3.298e-2237.971-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_METPP3.298e-2237.851-deoxy-D-xylulose-5-phosphate synthase OS=Methyli... [more]
DXS_DECAR3.298e-2240.721-deoxy-D-xylulose-5-phosphate synthase OS=Dechlor... [more]
DXS_BORPA3.298e-2240.991-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_BORBR3.298e-2240.991-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_SYNP64.307e-2239.261-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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