CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHLTE (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlorobium tepidum GN=dxs PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22 Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = -1 Query: 265 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 768 +M+ TA P R+PRG+G GA L + + TP+ +G+GRIL +G VA+LG G++ + + A +L++ + V D RF KPLDT++I A+ ++T+EE S +GGFGS+V ++L + +K S LPD ++ HGS + E GL + +S +L Sbjct: 465 NMLYTALYDIKGPVAIRYPRGSGSGATL--HKEFTPVPVGRGRILRDGKSVALLGIGTMSNRALETAALLEAAGLDPLVCDMRFLKPLDTEIIDMAASRCTHIVTIEENSIIGGFGSNVVNYLHHA---HPGIKCISFGLPDAFVTHGSMDELYREVGLDAESLSGKIL 628
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=dxs PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22 Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = -1 Query: 241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768 HM+ T DD P R+PRGNG G + + P IGK +L EG AIL +G+++ A LK ++ + +A KPLD L+ LA E L+T+EE + GGFGS V F G+ ++L+ M +PD +++HGS ++ +E GL+ I+ T++S+L + ++ Sbjct: 455 HMLYTGICYDDGPIAIRYPRGNGTGVKMDASLSRLP--IGKWNVLQEGTDAAILTFGTMIPVAEKALAQLKQAGYNIRLINANSVKPLDEKLLEALAEEELPLLTIEESVLQGGFGSAVLEFYNEKGM---HVELKRMGIPDYFVEHGSVSELYQEVGLTPERIADTLISMLPQKRK 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SHEHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxs PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22 Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = -1 Query: 268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765 M+ T +D P+ R+PRG+ GA P IGKG + +G ++AIL +G+ + C++AA L + TVAD RF KPLD +L+++LA H++L+TVEE ++ GG GS V L L L P + + LPD +I HG+P + E GL + I + Sbjct: 460 MLYTGYCYNDGPTAVRYPRGSATGAKQVETMTAMP--IGKGLLKRQGQKIAILNFGTTLASCLVAAEALDA-----TVADMRFVKPLDVELVKELAANHDVLVTVEENAIMGGAGSGV---LELLQTLKMPKPVLLIGLPDEFIKHGAPEEITSELGLDAAGIQKQI 616
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dxs PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22 Identity = 70/166 (42.17%), Postives = 96/166 (57.83%), Query Frame = -1 Query: 253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGD-----RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732 PS R+PRG+G GA + P +GKG + EG RV L +GS+V + AA L + VAD RF KPLD +L+++LA E++ L+TVEEGSV GG GS V L +GI D P + ++ LPDR++DHG PA L++ GL + I +V G Sbjct: 470 PSAVRYPRGSGPGAAIAAELTTVP--VGKGVMRREGGARAGHRVGFLAFGSMVHPALGAAEALDA-----AVADMRFVKPLDVELVKRLAAENDYLVTVEEGSVMGGAGSAVLEALAEAGI-DKP--VLTLGLPDRFVDHGDPAYLLQQCGLDAAGIERSVRERFG 625
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NITEU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas europaea GN=dxs PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22 Identity = 60/158 (37.97%), Postives = 92/158 (58.23%), Query Frame = -1 Query: 268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738 D P+ R+PRG+G G + + PL GKG I +G ++A+L +GS++ C+ A + ++ TV + RF KPLD +L+ LA EHE+L+T+EE ++ GG GS V L+ LD ++L + LPD +ID G PA L + GL I ++ Sbjct: 461 DTPAAVRYPRGSGPGVQIQQEMQTIPL--GKGEIRRQGKQIALLAFGSMLTPCLEAGD-----ELDATVVNMRFVKPLDQELVATLAAEHELLVTIEENTIMGGAGSAVMESLS---SLDKNVRLLQLGLPDSFIDQGDPAHMLSDCGLDKAGIIQSI 608
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_METPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylibium petroleiphilum (strain PM1) GN=dxs PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22 Identity = 67/177 (37.85%), Postives = 98/177 (55.37%), Query Frame = -1 Query: 241 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 756 TAA P R+PRG G+G + ++ T L G+G + E G R+AIL +G+++ + AA L + TVA+ RF KPLDT+L+ LA HE L+TVEEG + GG GS V L +G+ L + ++ LPD +++HG PA L + GL + I ++L G E Sbjct: 457 TAAFEQQHPVAVRYPRGAGVGVAV--QSELTALPWGRGELRREARGGGRRIAILAFGTLLYPALAAAEKLDA-----TVANMRFIKPLDTELVLSLARSHEALVTVEEGCLQGGAGSAVLEALQAAGV---NLPVLTLGLPDEFVEHGDPAKLLAQLGLDAAGIEQSILKRFGAKLE 623
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DECAR (1-deoxy-D-xylulose-5-phosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=dxs PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22 Identity = 68/167 (40.72%), Postives = 92/167 (55.09%), Query Frame = -1 Query: 268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765 M++TA ID PS R+PRG+G G + K L +GKG I G +A+L +GS+V V A +++ TVA+ RF KPLD DLI +LA H +L+++EE +V GG GS + L G+ L+L LPDR+IDHG L E GL I V Sbjct: 456 MLSTAMTIDG-PSMVRYPRGSGTGTI--PEAKLDTLPVGKGDIRRRGKDIALLAFGSLVAAAVAAG-----EELDATVANMRFIKPLDADLIVELAGNHSLLVSIEENAVIGGAGSEIERVLAERGLQVPVLRLG---LPDRFIDHGEQGQLLAELGLDKEGIVRAV 611
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BORPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella parapertussis GN=dxs PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22 Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = -1 Query: 253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732 P+ R+PRG G GA + PL GKG + EG R+AILG+G++VQ + AA I TVAD RF KPLD +L+ +LA H+ L+TVEE ++ GG GS V L +G+ L + + LPD +IDHG A L GL + I + + G Sbjct: 466 PASVRYPRGAGCGAAVGEGLATVPL--GKGLVRREGRRIAILGFGTLVQAALGAAGQ-----IDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAIRARFG 616
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BORBR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella bronchiseptica GN=dxs PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22 Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = -1 Query: 253 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732 P+ R+PRG G GA + PL GKG + EG R+AILG+G++VQ + AA I TVAD RF KPLD +L+ +LA H+ L+TVEE ++ GG GS V L +G+ L + + LPD +IDHG A L GL + I + + G Sbjct: 466 PASVRYPRGAGCGAAVGEGLATVPL--GKGLVRREGRRIAILGFGTLVQAALGAAGQ-----IDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAIRARFG 616
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxs PE=3 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = -1 Query: 253 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 738 D P RFPRGNGIG LP + L IGK L +GD + +L YGS+V + A +L IS TV +ARF KPLD +LI LA + ++T EEG + GGFGS + L D + + + +PD ++H SP + +E GL+ R ++ +L G Sbjct: 468 DGPIAMRFPRGNGIGVPLPEEGWES-LPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAH---DLQVPVLPIGVPDLLVEHASPDESKQELGLTPRQMADRILEKFG 626 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |