CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.773e-45
Identity = 89/177 (50.28%), Postives = 119/177 (67.23%), Query Frame = -1
Query:  238 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 768
            HMV TAA  DD P  FR+PRGNG+G  +P   +G  LE+GKGR++ EG +VA+L +G+ +Q C++AA  L +  +S TVADARF KPLD DLIR+LA  HE+L+TVEEG++GGF SHV  FL   G+L+  LK+R +VLPD + DH  P     ++GL +  I  TV + L     A
Sbjct:  460 HMVRTAAAYDDGPIAFRYPRGNGVGVDMP--ERGEVLELGKGRVVREGSKVALLSFGTRLQDCLIAAEELGAAGLSTTVADARFAKPLDEDLIRRLARSHEVLVTVEEGAIGGFASHVLQFLAHEGLLESGLKVRPLVLPDVFTDHAKPEKMYADAGLDAAGIVRTVFTALDHTARA 634          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BRUA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain 2308) GN=dxs PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.773e-45
Identity = 93/173 (53.76%), Postives = 120/173 (69.36%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+L  EHE+L+ VEEG+VGGF SHV  FL   G+LD  LK+R+++LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  459 HMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLVREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.177e-45
Identity = 89/177 (50.28%), Postives = 123/177 (69.49%), Query Frame = -1
Query:  238 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 768
            HMV TAA  D+ P  FR+PRG G G  LP   +G  L+IGKGRI+ EG ++A+L  G+ +  C++AA  L++  +S TVADARF KPLD DLIR+LA EHE+L+TVEEGS+GGFG+HV HFL   G+L+  LK+R +V+PD ++D   P     ++GL +  I  TV + LG+ ++A
Sbjct:  473 HMVRTAADHDEGPIAFRYPRGEGTGVPLP--QRGEILKIGKGRIVREGSKIALLSLGTRLADCMIAAEELEAAGLSTTVADARFAKPLDADLIRRLAREHEVLVTVEEGSIGGFGAHVLHFLAHEGLLENGLKVRPLVMPDIFMDQAKPEKMYAKAGLDAAGIVKTVFAALGQAEQA 647          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 88/175 (50.29%), Postives = 122/175 (69.71%), Query Frame = -1
Query:  244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768
            HMVAT   I+D PS  R+PRG G G  +P    G PLEIGKGR++ +G+++A+L +G+ + +C  AA+ L +  +S TVADARF KPLD +L+ +LA EHE+LITVEEGS+GGFGSHV   L   G+LDG +++RS+VLPD ++DH +PA     +GL ++ I   V   LG+ K
Sbjct:  461 HMVATQVAINDAPSAVRYPRGEGRGVEMP--EVGIPLEIGKGRVVRQGNKIALLSFGTRLAECEKAADELATLGLSTTVADARFMKPLDVELVLKLAREHEVLITVEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPAVMYARAGLDAKGIVKKVFEALGKDK 633          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 92/173 (53.18%), Postives = 117/173 (67.63%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMV TA   D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQLA  HE++ITVEEGS+GGFGSHV HFL   G+LD  LKLRS+V+PD +++   P      +GL    I +TV   LGR
Sbjct:  460 HMVRTAVAYDGGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFGSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFKALGR 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 90/180 (50.00%), Postives = 123/180 (68.33%), Query Frame = -1
Query:  229 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 768
            HMVAT   I+DRPS  R+PRG G G  +P    G PL IGKGR++ +G +VA+L +G+ + +C  AA+ L +  +S ++ADARF KPLD +L+ +LA EHEILIT+EEGS+GGFGSHV  +L   G+LDG LK+RSMVLPD + DH +PA     +GL ++ I   V   LG+   A ++
Sbjct:  461 HMVATQVAINDRPSSVRYPRGEGRGVEMP--EVGVPLPIGKGRMIRQGKQVALLSFGTRLAECEKAADELAAHGLSASIADARFMKPLDEELVLKLAREHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEALGKDYTAEVV 638          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 98/178 (55.06%), Postives = 120/178 (67.42%), Query Frame = -1
Query:  238 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGP-LKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 768
            HMVATAA  D+ P  FR+PRG G+G  LP    G  L+IG+GRI+ EG  VA+L  G+ + +   AA  L S  ISVTVADARF KPLD DL+R+LA  HE+LIT+EEGSVGGFGS V   L   G+LDG  LK RSMVLPD ++DH  P     ++GL ++ I A VL+ LGR  EA
Sbjct:  461 HMVATAAAYDEGPIAFRYPRGEGVGIELP--QIGEILDIGRGRIVREGTTVALLSLGTRLAEASKAAEQLASYGISVTVADARFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 90/173 (52.02%), Postives = 123/173 (71.10%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMV TAA  D  P  FR+PRG GIG  LP   +G  LEIGKGRIL EG+R+A++ +G+ + + ++AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+T+EEG++GGFG+H+  FL   G+L+  LK+R++ LPD Y++HGS    L   GL +  I  TV S LGR
Sbjct:  460 HMVRTAAAYDQGPISFRYPRGEGIGMDLP--QRGEILEIGKGRILHEGNRIALVCFGTRISEVLVAADELSAEGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKLPDEYLNHGSQEKVLSRIGLDAVGIVNTVFSALGR 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.376e-44
Identity = 88/173 (50.87%), Postives = 124/173 (71.68%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMV TAA  D  P  FR+PRG GIG  LP   +G  LEIGKGR+L EG+R+A++ +G+ + + + AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+T+EEG++GGFG+H+  FL   G+L+  LK+R++  PD Y++HGSP   L   GL +  I  TVL+++GR
Sbjct:  460 HMVRTAAAYDQGPISFRYPRGEGIGIDLP--QRGEILEIGKGRVLREGNRIALVCFGTRMSEVLRAADRLGAKGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSTIGLDAMGIVNTVLTVVGR 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.347e-44
Identity = 90/172 (52.33%), Postives = 121/172 (70.35%), Query Frame = -1
Query:  253 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 768
            HMV TAAV D  P  FR+PRG GIG  LP   +G  LEIGKGR+L EG RVA++ +G+ + + ++AA+ L ++ IS TVADARF KPLD DL+R+LA EHE+ IT+EEG++GGFG+HV  FL    +L+  LK+R++ LPD Y++HGSP   L   GL ++ I   V + LG
Sbjct:  460 HMVRTAAVYDQGPISFRYPRGEGIGMDLP--QRGEVLEIGKGRVLREGSRVALVCFGTQLSEVLVAADELAAEGISTTVADARFAKPLDKDLMRRLAREHEVFITIEEGAIGGFGAHVLQFLAQEALLEHGLKVRTLRLPDEYLNHGSPEKILSRVGLDAKGIINAVFTSLG 629          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_RHILO2.773e-4550.281-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BRUA22.773e-4553.761-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_MESSB6.177e-4550.281-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_RHOP58.067e-4550.291-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHIL38.067e-4553.181-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BRASB8.067e-4550.001-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_BEII98.067e-4555.061-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_BARHE8.067e-4552.021-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BART11.376e-4450.871-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BARBK2.347e-4452.331-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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