CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1147..1914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.065e-44
Identity = 88/173 (50.87%), Postives = 120/173 (69.36%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMVAT   IDDRPS  R+PRG G G  +P    G  L IGKGR++ +G +VA+L +G+ + +C  AA+ L +  +S ++ADARF KPLD +L+ +LA +HEILIT+EEGS+GGFGSHV  +L   G+LDG LK+RSMVLPD + DH +PA     +GL ++ I   V  +LG+
Sbjct:  461 HMVATQVAIDDRPSSVRYPRGEGRGVEMP--EVGVALPIGKGRMIRQGKQVALLSFGTRLAECEKAADELAAHGLSASIADARFMKPLDEELVLKLARDHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEVLGK 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SILPO (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter pomeroyi GN=dxs PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.004e-44
Identity = 92/172 (53.49%), Postives = 118/172 (68.60%), Query Frame = -1
Query:  253 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 768
            HMVATAA  DD P  FR+PRG G+G  +P    G  LEIGKGR++ +G RVA+L +G+ + +   AA  L ++ I+ T+ADARF KPLD DLI  LA++HE LIT+EEG+VGGFGSHV   L   G+ D  LK RSMVLPD +ID  SPAD    +G+++  I A VL +LG
Sbjct:  464 HMVATAAAHDDGPIAFRYPRGEGVGVEMP--ELGKVLEIGKGRMIQKGARVALLSFGTRLTEVQKAAEALAARGITPTIADARFAKPLDRDLILNLAHDHEALITIEEGAVGGFGSHVAQLLADEGVFDHGLKFRSMVLPDIFIDQSSPADMYAVAGMNAPQIEAKVLDVLG 633          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_AGRVS (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxs PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.229e-44
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMV TAA  D+ P  FR+PRG G+G  +P   +G  L IGKGRI+ EG +VA+L +G+ + +C++AA  L +  +  TVADARF KPLD DLIRQLA  H +LITVEEG+VGGFGS V H L   G+LD  LK+RS+VLPD ++D   P    E++GL ++ I +TV + L R
Sbjct:  460 HMVRTAAAYDEGPISFRYPRGEGVGVQMP--ERGEILPIGKGRIIKEGSKVALLSFGTRLAECLVAAEDLDAAGLPTTVADARFAKPLDLDLIRQLARHHAVLITVEEGAVGGFGSQVLHMLANEGLLDHGLKVRSLVLPDLWMDQAKPDVMYEKAGLDAKGIVSTVFTALSR 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.229e-44
Identity = 86/173 (49.71%), Postives = 120/173 (69.36%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMV TAA  D+ P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ + +C+ AA  L +  +S TVADARF KPLD DLIRQLA  HE+L+T+EEGSVGGFG+HV HF+  +G+LD   K+R++ LPD++++   P      +GL    I +TV + LG+
Sbjct:  460 HMVRTAAAYDEGPISFRYPRGEGVGVEMPA--RGEILQIGKGRIIKEGTKVALLSFGTRLAECLAAAEDLDAAGLSTTVADARFAKPLDLDLIRQLAAHHEVLVTIEEGSVGGFGAHVLHFMASAGLLDHGPKVRTLTLPDQWVEQAKPETMYANAGLDRAGIVSTVFNALGQ 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.919e-44
Identity = 87/173 (50.29%), Postives = 118/173 (68.21%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HM+ATA   D+ P  FRFPRG G+G  +P   +GT LE G+GR++ EG  VAIL +G+ + + + AA +L+++ +SVTVADARF +PLDT LI QL   H  L+TVE+G++GGFG+HV H+L  SG  DG L LR M LPDR+I+  SP D   ++GL +  I+AT    L R
Sbjct:  463 HMIATAVAFDEGPIAFRFPRGEGVGVEMP--ERGTVLEPGRGRVVREGTDVAILSFGAHLHEALQAAKLLEAEGVSVTVADARFSRPLDTGLIDQLVRHHAALVTVEQGAMGGFGAHVMHYLANSGGFDGGLALRVMTLPDRFIEQASPEDMYADAGLRAEDIAATARGALAR 633          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.165e-43
Identity = 85/173 (49.13%), Postives = 121/173 (69.94%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMVAT   IDDRPS  R+PRG G G  +P    G PLEIGKGR++ +G++VA+L +G+ + +   AA+ L +  +S TVADARF KPLD +L+ +LA +HE+L+T+EEGS+GGFGSHV   L   G+LDG +K+R++VLPD ++DH +P      +GL ++ I   V  +LG+
Sbjct:  461 HMVATQVAIDDRPSAVRYPRGEGRGVEMP--EVGIPLEIGKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.165e-43
Identity = 85/173 (49.13%), Postives = 121/173 (69.94%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMVAT   IDDRPS  R+PRG G G  +P    G PLEIGKGR++ +G++VA+L +G+ + +   AA+ L +  +S TVADARF KPLD +L+ +LA +HE+L+T+EEGS+GGFGSHV   L   G+LDG +K+R++VLPD ++DH +P      +GL ++ I   V  +LG+
Sbjct:  461 HMVATQVAIDDRPSAVRYPRGEGRGVEMP--EVGIPLEIGKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.165e-43
Identity = 89/173 (51.45%), Postives = 117/173 (67.63%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMV TAA  D+ P  FR+PRG G+G  LP   +G  L IGKGRI+ +G++VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQLA  HE+LIT+EEG+VGGF SHV  FL   G++DG LK+R MV+PD +++   P      +GL    I +TV   LG+
Sbjct:  465 HMVRTAAAYDEGPISFRYPRGEGVGVELP--ERGEILAIGKGRIVKQGNKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEVLITIEEGAVGGFASHVLQFLAEEGLIDGGLKVRPMVMPDIWMEQAKPEAMYARAGLDRAGIVSTVFKALGQ 635          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 85/173 (49.13%), Postives = 120/173 (69.36%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMVAT   I+DRPS  R+PRG G G  +P    G  LEIGKGRI+ EG+++A+L +G+ + +C  AA+ L +  +S T+ADARF KPLD +L+ +LA +HEIL+T+EEGS+GGFGSHV   L   G+LDG +++RS+VLPD ++DH +P      +GL ++ I   V   LG+
Sbjct:  461 HMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGIALEIGKGRIVREGNKIALLSFGTRLAECEKAADELATLGLSTTIADARFMKPLDVELVLKLARDHEILLTIEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPTAMYARAGLDAKGIVKKVFEALGK 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.521e-43
Identity = 88/173 (50.87%), Postives = 121/173 (69.94%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            HMV TAA  D  P  FR+PRG G+G  LP   +G  LEIGKGR+L EG RVA++ +G+ + + ++AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+ VEEG++GGFG+H+  FL   G+L+  LK+R++  PD Y++HGSP   L   GL +  I  TV + LGR
Sbjct:  460 HMVRTAAAYDQGPISFRYPRGEGVGMDLP--QRGELLEIGKGRVLREGSRVALVCFGTRMSEVLVAADALIAEGLSTTVADARFAKPLDKDLMRRLACEHEVLVAVEEGAIGGFGAHLLQFLAKEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSRIGLDAVGIVNTVFTALGR 630          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_BRASO3.065e-4450.871-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_SILPO4.004e-4453.491-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_AGRVS5.229e-4452.021-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_AGRT55.229e-4449.711-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS1_RHOS48.919e-4450.291-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_RHOPT1.165e-4349.131-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA1.165e-4349.131-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHIME1.165e-4351.451-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHOPB1.521e-4349.131-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BARQU1.521e-4350.871-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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