CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSYIN (1-deoxy-D-xylulose-5-phosphate synthase OS=Psychromonas ingrahamii (strain 37) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.214e-16
Identity = 53/160 (33.12%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  277 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD-----QLEESGLSSRHIS 738
            ++P+  R+PRG G G  +  N + + L IGK +++ EG  +AIL +G+ +QQ    A  L +     T+ D RF KPLD +L+  LA+ H+  +T+EE S+ GG GS V  +     I    L +    +PDR+I+ G+  +     +L+ +G+  + +S
Sbjct:  467 NQPAAVRYPRGTGTG--IEINKQMSRLTIGKAKVVKEGKNLAILCFGTFLQQAYSVAEKLNA-----TLVDMRFVKPLDKELLDNLASTHKEFVTIEENSIAGGAGSAVNEYFMSQQIKTSVLNIG---IPDRFIEQGTQQEIYTLLELDSAGIEKQIVS 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_XANAC (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas axonopodis pv. citri GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.585e-16
Identity = 56/157 (35.67%), Postives = 82/157 (52.23%), Query Frame = -1
Query:  265 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 732
            P+  R+PRG G GA L  +    P  IGK ++   G R+A+LG+G+ V      A     +++ +TV + RF KPLD  L+ +LA  H+  +T+E+  V GG GS V   L    I    + L  + LPD +  H S  D L E+G+    I A +L
Sbjct:  473 PAAVRYPRGTGPGAALDASLATLP--IGKAQLRHSGTRIALLGFGATVD-----AAEAVGRELGLTVVNMRFVKPLDKALLLELAKTHDGFVTIEDNVVAGGAGSGVSELLNAEAI---TMPLLHLGLPDSFQHHASREDLLAEAGIDQAGIRAALL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CLOP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.585e-16
Identity = 51/161 (31.68%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P   R+PRG  I   L   +K   +E GK   + EGD++AI+  G +VQ  ++AA  +K + +I + + +A F KP+D +L+  L+ +   ++T+E+    GGFG  V  +L   G  +   K+ ++   D++I+HG P    + +GL +  I  T++ LL
Sbjct:  465 PLAIRYPRGGDIDVNLKPLSK---IEYGKWEKVQEGDKIAIVATGKMVQHAMIAAQKIKEEKNIDILIINATFIKPIDKELLNSLSKDGFKIVTIEDNIKKGGFGEGVLEYLNEIGHKE---KIVTLAFNDKFIEHGKPDILYKINGLDAEGIKNTLIELL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BAUCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=dxs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.071e-16
Identity = 62/173 (35.84%), Postives = 92/173 (53.18%), Query Frame = -1
Query:  250 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 765
            M+ T    ++ PS  R+PRGNGIG           L +GK  +  +G ++AIL +G+++ Q   A  + K+ D   T+ D RF KPLD +LI QLA  H+ L+T+EE +V GG GS V  +L    +L   + + ++ LPD +I  GS  +   E  L S  I   +   L R
Sbjct:  462 MLHTGYHYNNGPSAVRYPRGNGIGVEYSLLRI---LPLGKAIVCRQGTKIAILNFGTLLTQ---AKKVAKTFD--ATLVDMRFVKPLDIELINQLAISHQALVTLEENAVIGGAGSGVNEYLMRQRLL---VPVLNIGLPDYFIPQGSQEEIRAELKLDSDGIMEQIKQWLAR 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_AERS4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Aeromonas salmonicida (strain A449) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.071e-16
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = -1
Query:  268 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 738
            ++P+  R+PRG+G G  +    +   LE+GKGRI+  G   AIL +G+++QQ   AA  L +     T+ D RF KP+D  L+  LA  H+  +T+E+ ++ GG GS V   L  +      L L    LPDR+++ G+  +     GL S  I A++
Sbjct:  468 NQPAAVRYPRGSGTG--IEVQTEMQVLELGKGRIVRNGKGTAILAFGTLLQQARAAAEALDA-----TLVDMRFVKPMDEALVLSLAASHDQFVTIEDNAIMGGAGSAVNELLMRNKQCKPVLNLG---LPDRFVEQGTQEEIYALLGLDSTGIQASI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PECCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.704e-16
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRGNG G  L   ++   L IGKG +  +G+ +AIL +G+++ +  +AA     + ++ T+ D RF KPLD  L+ +LA  H   +T+EE ++ GG GS V  FL    +    + + ++ LPD +I  GS  +   + GL +  I   +
Sbjct:  472 PTAVRYPRGNGTGTELTPLSE---LPIGKGVVRRQGETIAILNFGTLLPEAQIAA-----EKLNATLVDMRFVKPLDEALLEELAQSHSTFVTLEENAIMGGAGSGVNEFLMAKRL---AVSVLNIGLPDVFIPQGSQEEIRADLGLDAAGIERKI 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PASMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Pasteurella multocida GN=dxs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.704e-16
Identity = 53/162 (32.72%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            ++P+  R+PRGN IG  L      T L +GK  ++ EG+++AIL +G+++   +  A  L +     TV D RF KP+D + I Q+A  H++++T+EE  + GG GS V   L          KL  + LPD +I  G+  + L +  L    I   + + L
Sbjct:  464 NQPAAVRYPRGNAIGVELTPL---TMLALGKSNLIREGEKIAILNFGTLLPTAINVAEKLNA-----TVIDMRFVKPIDVERIHQIAQTHDLIVTLEENVIQGGAGSAVAEVLHSQ---QHQTKLLQLGLPDFFIPQGTQQEILADLHLDEAGIETQIKNFL 614          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MANSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.704e-16
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = -1
Query:  256 RPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 735
            +P+  R+PRGN IG  L    K   LEIGK  ++ +G  +AIL +G+++   +  A  L +     TV D RF KPLD + I +LA  H  L+T+EE ++ GG GS V   +    I    + +  + LPD ++  G+  + L+E  L +  I   + + L
Sbjct:  465 KPAAVRYPRGNAIGVELEPLRK---LEIGKSNLVRQGQDIAILNFGTLLPNALDVAEKLNA-----TVVDMRFVKPLDHERINELAKTHRTLVTLEENTIQGGAGSAVSEVV---NIQQHHVNILHLGLPDEFVAQGTQQEVLKELKLDATGIEEQIKNFL 614          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CARHZ (1-deoxy-D-xylulose-5-phosphate synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.704e-16
Identity = 55/162 (33.95%), Postives = 84/162 (51.85%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            P   R+PRG  +G  L    +   L IG   IL EG    ++G G  +   + AA  L+++ IS+TV DARF KPLD  L+ ++ + H+ +ITVEE  V GGFGS V  + +  GI     K+ ++ + D +  HG   + L   GL+   +      +L +
Sbjct:  466 PVALRYPRGAAVGVELTPYEQ---LPIGTAEILKEGSDGVVIGVGRPLNYALKAAQKLENEGISLTVIDARFVKPLDYKLLEEVGSLHKPVITVEENVVAGGFGSAVNEYFSFRGI---GTKVVNLGIADEFPPHGKVEEILNLYGLTEEKLYLKFREILSK 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SODGM (1-deoxy-D-xylulose-5-phosphate synthase OS=Sodalis glossinidius (strain morsitans) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.613e-16
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            PS  R+PRGN  GA L   ++   L +GKG +  +G  VAIL +G+++ Q   AA     Q I+ T+ D RF KPLD  LI +LA  H+ L+TVEE ++ GG GS V  ++    +    + + ++ LPD +I  GS  +   + GL    I   +
Sbjct:  471 PSTVRYPRGNSTGAPLTDLHE---LPLGKGVVHRQGAGVAILNFGTLLPQAEHAA-----QAINATLVDMRFVKPLDDTLISELAASHQALVTVEENAIMGGAGSGVNEYVMQQRL---QVPVLNIGLPDHFIPQGSQEEIRADLGLDGAGIQRQI 615          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_PSYIN1.214e-1633.131-deoxy-D-xylulose-5-phosphate synthase OS=Psychro... [more]
DXS_XANAC1.585e-1635.671-deoxy-D-xylulose-5-phosphate synthase OS=Xanthom... [more]
DXS_CLOP11.585e-1631.681-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_BAUCH2.071e-1635.841-deoxy-D-xylulose-5-phosphate synthase OS=Baumann... [more]
DXS_AERS42.071e-1634.811-deoxy-D-xylulose-5-phosphate synthase OS=Aeromon... [more]
DXS_PECCP2.704e-1633.331-deoxy-D-xylulose-5-phosphate synthase OS=Pectoba... [more]
DXS_PASMU2.704e-1632.721-deoxy-D-xylulose-5-phosphate synthase OS=Pasteur... [more]
DXS_MANSM2.704e-1633.541-deoxy-D-xylulose-5-phosphate synthase OS=Mannhei... [more]
DXS_CARHZ2.704e-1633.951-deoxy-D-xylulose-5-phosphate synthase OS=Carboxy... [more]
DXS_SODGM4.613e-1636.541-deoxy-D-xylulose-5-phosphate synthase OS=Sodalis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
back to top