CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CLOPE (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium perfringens GN=dxs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.613e-16
Identity = 50/161 (31.06%), Postives = 89/161 (55.28%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P   R+PRG  I   L   +K   +E GK   + EG+++AI+  G +VQ  ++AA  +K + +I + + +A F KP+D +L+  L+ +   ++T+E+    GGFG  V  +L   G  +   K+ ++   D++I+HG P    + +GL +  I  T++ LL
Sbjct:  465 PLAIRYPRGGDIDVNLKPLSK---IEYGKWEKVQEGEKIAIVATGKMVQHAMIAAQKIKEEKNIDILIINATFIKPIDKELLNSLSKDGFKIVTIEDNIKKGGFGEGVLEYLNEIGHKE---KIVTLAFNDKFIEHGKPDILYKINGLDAEGIKNTLIELL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_XYLFA (1-deoxy-D-xylulose-5-phosphate synthase OS=Xylella fastidiosa GN=dxs PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  262 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 732
            P   R+PRG G G V   + +   L +G  ++   G R+A+LG+G     CV  A  +  + + +TV + RF KPLD  L+ +LA  HE  +T+E+  V GG GS V   L   GI+   L +  + LPD +  H S  D L E+G+ +  + A +LS
Sbjct:  472 PVAVRYPRGTGPGVV--PSAELDVLPVGVAQLRHSGTRIALLGFGV----CVAPAEQV-GRRLGLTVVNMRFIKPLDRTLLLELARTHEGFVTIEDNVVAGGAGSGVAELLNAEGIV---LPIVHLGLPDAFQQHASREDLLAEAGIDAAGVYAALLS 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CLOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 50/161 (31.06%), Postives = 88/161 (54.66%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P   R+PRG  I   L   +K   +E GK   + EG+++AI+  G +VQ  ++AA  +K + +I + + +A F KP+D +L+  L+ +   ++T+E+    GGFG  V  +L   G  +   K+ ++   D++I+HG P      +GL +  I  T++ LL
Sbjct:  465 PLAIRYPRGGDIDVNLKPLSK---IEYGKWEKVQEGEKIAIVATGKMVQHAMIAAQKIKEEKNIDILIINATFIKPIDKELLNSLSKDGFKIVTIEDNIKKGGFGEGVLEYLNEIGHEE---KIVTLAFNDKFIEHGKPDILYRINGLDAEGIKNTLIELL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACIAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Acinetobacter sp. (strain ADP1) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.868e-16
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKS-QDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRG G+G  +    + T LEIGK  ++++      + + IL +GS V   + AA  L    DI +TV + RF KPLD  +IR LA   ++ +T+EE +V  G GS V  +L  + I+   L L    LPD ++   +    L+  GL +  I A++
Sbjct:  473 PAAVRYPRGAGLGVEI--QQELTKLEIGKAEMVLQCHPEHDEHITILAFGSRVSVAMEAAQQLAQLHDIGITVVNMRFVKPLDEQIIRDLAERTQLFVTIEEHAVMAGAGSAVNEYLAKAQIMKPTLNLG---LPDTFMAQATHTQMLKNCGLDAEGIQASI 629          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HAEDU (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus ducreyi GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 56/172 (32.56%), Postives = 92/172 (53.49%), Query Frame = -1
Query:  268 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISV----TVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 768
            H +   A     P+  R+PRGN  G  L    +   L +GK RI+ +G +VAIL +G+++ +         +Q++++    T+ D RF KPLD  LI +LA+ H +L+T+EE ++ GG GS V  +L   G +  PL L  + LPD +I   +  +   + GL ++ I   +
Sbjct:  456 HQMLYTAYKMQTPTAIRYPRGNARGIALQPMAE---LAVGKARIIHQGKKVAILNFGALLSE---------AQEVAISHNYTLVDMRFVKPLDKTLISELADSHSLLVTLEENAIQGGAGSAVNEYLQQIGKIK-PLVL--IGLPDMFIPQSTQQESYADFGLDAKGIDQKI 612          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRATW (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 53/160 (33.12%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG GIGA +  +     LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  HEI++T+EE  + GG GS V  +      L   + +R+  L D++++HG+    L +S L   +IS  +  L+
Sbjct:  465 PAMVRYPRGAGIGAEITGS---LDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDEIMLDKVSQTHEIILTLEENCIAGGAGSAVNEYFVAKD-LSNKIIVRNFGLQDKFLNHGTKDLLLAQSKLCVENISQELDKLI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRATT (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. tularensis GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 53/160 (33.12%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG GIGA +  +     LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  HEI++T+EE  + GG GS V  +      L   + +R+  L D++++HG+    L +S L   +IS  +  L+
Sbjct:  465 PAMVRYPRGAGIGAEITGS---LDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDEIMLDKVSQTHEIILTLEENCIAGGAGSAVNEYFVAKD-LSNKIIVRNFGLQDKFLNHGTKDLLLAQSKLCVENISQELDKLI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRATO (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 53/160 (33.12%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG GIGA +  +     LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  HEI++T+EE  + GG GS V  +      L   + +R+  L D++++HG+    L +S L   +IS  +  L+
Sbjct:  465 PAMVRYPRGAGIGAEITGS---LDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDKIMLDKVSQTHEIILTLEENCIAGGAGSAVNEYFVAKD-LSNKIIVRNFGLQDKFLNHGTKDLLLAQSKLCVENISKELDKLI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRATN (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. novicida (strain U112) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 53/160 (33.12%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG GIGA +  +     LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  HEI++T+EE  + GG GS V  +      L   + +R+  L D++++HG+    L +S L   +IS  +  L+
Sbjct:  465 PAMVRYPRGAGIGAEITDS---LDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDEIMLDKVSQTHEIILTLEENCIAGGAGSAVNEYFVAKD-LSNKIIVRNFGLQDKFLNHGTKDLLLAQSKLCVENISQELDKLI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRATH (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 53/160 (33.12%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG GIGA +  +     LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  HEI++T+EE  + GG GS V  +      L   + +R+  L D++++HG+    L +S L   +IS  +  L+
Sbjct:  465 PAMVRYPRGAGIGAEITGS---LDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDKIMLDKVSQTHEIILTLEENCIAGGAGSAVNEYFVAKD-LSNKIIVRNFGLQDKFLNHGTKDLLLAQSKLCVENISKELDKLI 615          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_CLOPE4.613e-1631.061-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_XYLFA7.868e-1635.441-deoxy-D-xylulose-5-phosphate synthase OS=Xylella... [more]
DXS_CLOPS7.868e-1631.061-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_ACIAD7.868e-1633.951-deoxy-D-xylulose-5-phosphate synthase OS=Acineto... [more]
DXS_HAEDU1.028e-1532.561-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_FRATW1.028e-1533.131-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_FRATT1.028e-1533.131-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_FRATO1.028e-1533.131-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_FRATN1.028e-1533.131-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_FRATH1.028e-1533.131-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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