CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRATF (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 53/160 (33.12%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG GIGA +  +     LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  HEI++T+EE  + GG GS V  +      L   + +R+  L D++++HG+    L +S L   +IS  +  L+
Sbjct:  465 PAMVRYPRGAGIGAEITGS---LDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDKIMLDKVSQTHEIILTLEENCIAGGAGSAVNEYFVAKD-LSNKIIVRNFGLQDKFLNHGTKDLLLAQSKLCVENISKELDKLI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRAT1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 53/160 (33.12%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG GIGA +  +     LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  HEI++T+EE  + GG GS V  +      L   + +R+  L D++++HG+    L +S L   +IS  +  L+
Sbjct:  465 PAMVRYPRGAGIGAEITGS---LDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDEIMLDKVSQTHEIILTLEENCIAGGAGSAVNEYFVAKD-LSNKIIVRNFGLQDKFLNHGTKDLLLAQSKLCVENISQELDKLI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_XANC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dxs PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.342e-15
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = -1
Query:  265 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 732
            P+  R+PRG G G  L  +    P  IGK ++   G R+A+LG+G+ V      A     +++ +TV + RF KPLD  ++ +LA  H+  +T+E+  V GG G+ V   L    I    + +  + LPD +  H S  D L E+G+    I A VL
Sbjct:  473 PAAVRYPRGTGPGVALDASLATLP--IGKAQLRHSGTRIALLGFGATVD-----AAEAVGRELGLTVVNMRFVKPLDKAMLLELAKTHDGFVTIEDNVVAGGAGAGVSELLNAEAI---TMPMLHLGLPDSFQHHASREDLLAEAGIDQAGIRAAVL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ERWT9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.342e-15
Identity = 56/152 (36.84%), Postives = 84/152 (55.26%), Query Frame = -1
Query:  295 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD-----QLEESGL 732
            PS  R+PRGNG GA L        L +GKG +   G+++AIL +G+++ Q    A     + I+ T+ D RF KPLD  L+ +LA +H+ LIT+EEGS+ GG GS V   L         + + ++ LPD +I  G+  +     QL+  G+
Sbjct:  471 PSAVRYPRGNGTGAPLEAL---ASLPLGKGVVKRRGEKMAILNFGTLLPQAAEVA-----EAINATLVDMRFVKPLDEALVLELAAQHQSLITLEEGSIKGGAGSGVNELLMAK---RRAIPVLNIGLPDEFIPPGTQDEIRSDYQLDADGI 611          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PORGI (1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 53/175 (30.29%), Postives = 87/175 (49.71%), Query Frame = -1
Query:  247 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 768
            +++ TA    D P   R+PRG G+  +    N    +EI +GR L EG+ +A L  G +          L  + +S    D  F KPLD +++  +A + + +I+VE+G + GGFGS V  F+      D   ++R + +PDR+I  GS  +Q  + G+ +  +      LL  P
Sbjct:  465 NLMLTAYKGYDGPMVIRYPRGKGV--LTDWRNTPRLVEIARGRCLTEGEAIAFLSIGPIGNMVQKVVERLAEKGVSAAHYDMVFLKPLDEEMLHGIAKKFDTIISVEDGCIQGGFGSAVMEFMADH---DYHPRIRRVGVPDRFIGQGSVPEQYADCGMDADSLLHLTEELLLHP 634          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PORG3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 53/175 (30.29%), Postives = 87/175 (49.71%), Query Frame = -1
Query:  247 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 768
            +++ TA    D P   R+PRG G+  +    N    +EI +GR L EG+ +A L  G +          L  + +S    D  F KPLD +++  +A + + +I+VE+G + GGFGS V  F+      D   ++R + +PDR+I  GS  +Q  + G+ +  +      LL  P
Sbjct:  465 NLMLTAYKGYDGPMVIRYPRGKGV--LTDWRNTPRLVEIARGRCLTEGEAIAFLSIGPIGNMVQKVVERLAEKGVSAAHYDMVFLKPLDEEMLHGIAKKFDTIISVEDGCIQGGFGSAVMEFMADH---DYHPRIRRVGVPDRFIGQGSVPEQYADCGMDADSLLHLTEELLLHP 634          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PELTS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 57/169 (33.73%), Postives = 86/169 (50.89%), Query Frame = -1
Query:  265 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 768
            HM+ TA +    P+  R+PR  G G  +  + K  PL  G+  +L +G  V +L  GS+V   V AA +L    I   V +ARF KPLD + I + A     + T+EE  + GGFGS V   L+  G  +  + +    +PD +++HG+ A  L   GL+   +   VL
Sbjct:  455 HMLYTA-LSHPGPAAVRYPRSAGTGCRMDDSFKIIPL--GRAEVLRDGTEVTLLAVGSMVCLAVKAAEILAGHGIDAAVINARFVKPLDKECILRYARRTREVFTLEENVLQGGFGSAVQELLSSCG--ERGVSVHCFGIPDSFVEHGNRALLLARYGLTVEQVVRAVL 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ALKOO (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 54/153 (35.29%), Postives = 87/153 (56.86%), Query Frame = -1
Query:  280 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 732
            P   R+PRG+   + +      +PL +GKG I    G+ V IL  G+  +  +     L+  +I  T+ + RF KP+D +LI ++  +H+I+ T+E+ S +GGFG+ V   L  + IL  P+K+    LPDR+I+HG+  D  EE GL+ + I
Sbjct:  467 PVAIRYPRGH---SNMDSQENFSPLALGKGEITYHSGNDVLILALGTFNKMGLEICKDLEENNIFSTLMNPRFIKPMDEELIVEMVQKHKIIYTIEDNSKIGGFGTLVQVLLNDNQILK-PVKV--CALPDRFIEHGNVEDLYEELGLTKKQI 613          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BUCAT (1-deoxy-D-xylulose-5-phosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = -1
Query:  325 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 765
            M+ T  + +  PS  R+P+G G+GA+L   N+   + IGK  I   G ++AIL +G ++     AA  L +     T+ D RF KPLD  +I +L+++++  IT+EEG + GG GS V  F+ ++ I    L + ++ LPD +I  G+
Sbjct:  447 MLYTGYMHNKGPSVVRYPKGYGVGALLMPMNR---IPIGKSLIKRRGKKIAILNFGILLHNAYCAAEKLDA-----TLVDMRFVKPLDKSMILKLSSQNKFFITLEEGVISGGAGSAVNEFIMVNKIF---LPVLNIGLPDTFIPQGT 583          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BUCA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = -1
Query:  325 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 765
            M+ T  + +  PS  R+P+G G+GA+L   N+   + IGK  I   G ++AIL +G ++     AA  L +     T+ D RF KPLD  +I +L+++++  IT+EEG + GG GS V  F+ ++ I    L + ++ LPD +I  G+
Sbjct:  447 MLYTGYMHNKGPSVVRYPKGYGVGALLMPMNR---IPIGKSLIKRRGKKIAILNFGILLHNAYCAAEKLDA-----TLVDMRFVKPLDKSMILKLSSQNKFFITLEEGVISGGAGSAVNEFIMVNKIF---LPVLNIGLPDTFIPQGT 583          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_FRATF1.028e-1533.131-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_FRAT11.028e-1533.131-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_XANC51.342e-1533.761-deoxy-D-xylulose-5-phosphate synthase OS=Xanthom... [more]
DXS_ERWT91.342e-1536.841-deoxy-D-xylulose-5-phosphate synthase OS=Erwinia... [more]
DXS_PORGI1.753e-1530.291-deoxy-D-xylulose-5-phosphate synthase OS=Porphyr... [more]
DXS_PORG31.753e-1530.291-deoxy-D-xylulose-5-phosphate synthase OS=Porphyr... [more]
DXS_PELTS1.753e-1533.731-deoxy-D-xylulose-5-phosphate synthase OS=Pelotom... [more]
DXS_ALKOO1.753e-1535.291-deoxy-D-xylulose-5-phosphate synthase OS=Alkalip... [more]
DXS_BUCAT2.289e-1535.141-deoxy-D-xylulose-5-phosphate synthase OS=Buchner... [more]
DXS_BUCA52.289e-1535.141-deoxy-D-xylulose-5-phosphate synthase OS=Buchner... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
back to top