CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ERWCT (1-deoxy-D-xylulose-5-phosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.990e-15
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRGNG G  L   ++   L IGKG +  +G  VAIL +G+++ +    A     + ++ T+ D RF KPLD  L+ +LA  H   +T+EE +V GG GS V  FL    +    + + ++ LPD +I  GS  +   + GL +  I   +
Sbjct:  472 PTAVRYPRGNGTGTELTPLSE---LPIGKGVVRRQGKTVAILNFGTLLPEAQAVA-----EKLNATLVDMRFVKPLDEALLEELAQSHSTFVTLEENAVMGGAGSGVNEFLMAKRL---AVSVLNIGLPDVFIPQGSQEEIRVDLGLDAAGIERRI 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_METCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylococcus capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = -1
Query:  268 IDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 744
            I D P+  R+PRG G G V P     T   +GKG + + G   AIL +G+      LAA +   + I  TVA+ RF KPLD  LI +LA  H+ ++TVEE ++ GG GS V  FL         + +  + L D ++D G+  + L  +GL    I+ ++
Sbjct:  466 IHDGPAAVRYPRGRGPG-VRPEETM-TAFPVGKGEVRLRGKGTAILAFGTP-----LAAALAVGERIGATVANMRFVKPLDEALILELAATHDRIVTVEENAIAGGAGSAVGEFLAAQHC---GIPVCHIGLKDEFLDQGTREELLAIAGLDQAGIARSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_EXIS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = -1
Query:  241 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 753
            +AV  + P   RFPRG GIG  +P +     + +    +  EG  VAI+ +G  VQ  +  A +L+  D+SV V +AR  KPLD  ++  L  E   L+T+EE  + GGFGS V   L  +   +   +++   +PD YI+HG   + LEE GL    I+  V S + + K+
Sbjct:  460 SAVKYEGPIAVRFPRGEGIG--VPMDETLHEISLDTWDVEREGTDVAIMAFGPQVQDALKIAELLEG-DVSVRVINARTIKPLDEKMLNALYAEGIPLVTLEEAVLKGGFGSAV---LEHANEQEAFPRVKRFGIPDWYIEHGGVNELLEEIGLLPGQIAEEVRSFVNQGKK 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACIBS (1-deoxy-D-xylulose-5-phosphate synthase OS=Acinetobacter baumannii (strain SDF) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  280 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANML-KSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 732
            P+  R+PRG G+G  +    + T LE+GK  I+ E      +++ +L +GS V   + AA    +  D+SV V + RF KPLD  +IR LA    + +TVEE ++ GG GS V  F+    I+   + L    LPD ++   +    L++ GL ++ I
Sbjct:  470 PAAVRYPRGAGVGVEI--QKEMTVLELGKAEIVAEIKANSDEQITVLAFGSRVMVALEAAEQFAQKHDVSVCVVNMRFVKPLDEQMIRDLAEHTHLFVTVEEHAIMGGAGSAVNEFMAQEQIVKPIINLG---LPDSFLHQATHNQMLQDCGLDAKGI 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS2_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces avermitilis GN=dxs2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = -1
Query:  250 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 753
            A  +DD P+  RF +G  +G  +P   +     IG   +L E       V ++  G++   C+  A +L  Q IS TV D R+ KP+D + +  LA  H +++TVE+ S VGG GS +   L  +G+    + LR   +P R++DH S  + + E GL++  I+  V  L+ +
Sbjct:  460 AVDVDDAPTVVRFSKG-AVGPAVPAVGR-----IGGMDVLREPGTDAPDVLLVSVGALAPMCLEIAGLLDKQGISATVVDPRWVKPVD-EAMAPLAERHRVVVTVEDNSRVGGVGSAIAQALRDAGV---DVPLRDFGIPPRFLDHASRGEVMAEIGLTAPDIARQVTGLVSK 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HAMD5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 54/156 (34.62%), Postives = 82/156 (52.56%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRG G G  L       PL IGK  I ++G+++A+L +G+++      A  L +     T+ D RF KPLDT+LI  +A+ H +L+T+EE  + GG GS V   L         + L ++ LPD++I  G   +     GL SR I   +
Sbjct:  470 PAAVRYPRGQGTGVALQPL---FPLTIGKSEIKIQGEKIALLCFGTLLSVAREVAIHLNA-----TLVDMRFIKPLDTELILAMASNHSLLVTIEENVIKGGAGSAVNECLMSH---KKTVMLLNIGLPDQFIPQGEQNEMRAAYGLDSRGIQKQI 614          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRATM (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 52/160 (32.50%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P+  R+PRG GIGA +  +     LE+GK +I+ +G ++AIL +G+++    LA  +  ++    TV D RF KPLD  ++ +++  +EI++T+EE  + GG GS V  +      L   + +R+  L D++++HG+    L +S L   +IS  +  L+
Sbjct:  465 PAMVRYPRGAGIGAEITGS---LDLELGKAKIVKQGSKIAILNFGTLLP---LAKQL--AEKYHATVIDMRFVKPLDEIMLDKVSQTYEIILTLEENCIAGGAGSAVNEYFVAKD-LSNKIIVRNFGLQDKFLNHGTKDLLLAQSKLCVENISQELDKLI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACIBY (1-deoxy-D-xylulose-5-phosphate synthase OS=Acinetobacter baumannii (strain AYE) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 52/158 (32.91%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  280 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANML-KSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 732
            P+  R+PRG G+G  +    + T LE+GK  I+ E      +++ +L +GS V   + AA    +  D+SV + + RF KPLD  +IR LA    + +TVEE ++ GG GS V  F+    I+   + L    LPD ++   +    L++ GL ++ I
Sbjct:  470 PAAVRYPRGAGVGVEI--QKEMTVLELGKAEIVAEIKANSDEQITVLAFGSRVMVALEAAEQFAQKHDVSVCIVNMRFVKPLDEQMIRDLAEHTHLFVTVEEHAIMGGAGSAVNEFMAQEQIVKPIINLG---LPDSFLHQATHNQMLQDCGLDAKGI 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_AERHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRG+G G  +   ++   L +GKGRI+ +G   AIL +G+++QQ   AA  L       T+ D RF KP+D  L+  LA  H+  +T+E+ ++ GG GS V   L  S      L L    LPDR+++ G+  +     GL    I  ++
Sbjct:  470 PAAVRYPRGSGTG--IQVESEMQALALGKGRIVRQGKGTAILAFGTLLQQAKAAAEAL-----DATLVDMRFVKPMDEALVFSLAATHDQFVTLEDNAIMGGAGSAVNELLMRSKQCKPVLNLG---LPDRFVEQGTQEEIYALLGLDGTGIQRSI 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ACIC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = -1
Query:  310 AVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQL 750
            A++ D PS  R+PRG G G  +    +  P  IGK ++L EG+ +AILG G+++         L  Q     V + RF KP+DT+L+   A+     +T+E+   +GGFGS V   L   G     +++     PDR+I+HG   DQL
Sbjct:  458 AMLHDGPSAIRYPRGTGPGHAVKQQPEALP--IGKAKVLHEGEDIAILGLGALLPMAEQIREELARQGYRAAVINPRFVKPVDTELLAHYADRVTAFLTLEDHVLMGGFGSAVMEELNALGKSTPVVRIG---WPDRFIEHGK-VDQL 599          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_ERWCT2.990e-1533.971-deoxy-D-xylulose-5-phosphate synthase OS=Erwinia... [more]
DXS_METCA3.905e-1535.631-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]
DXS_EXIS23.905e-1534.881-deoxy-D-xylulose-5-phosphate synthase OS=Exiguob... [more]
DXS_ACIBS3.905e-1533.541-deoxy-D-xylulose-5-phosphate synthase OS=Acineto... [more]
DXS2_STRAW3.905e-1531.791-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_HAMD55.100e-1534.621-deoxy-D-xylulose-5-phosphate synthase OS=Hamilto... [more]
DXS_FRATM5.100e-1532.501-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_ACIBY5.100e-1532.911-deoxy-D-xylulose-5-phosphate synthase OS=Acineto... [more]
DXS_AERHH6.661e-1533.971-deoxy-D-xylulose-5-phosphate synthase OS=Aeromon... [more]
DXS_ACIC56.661e-1535.141-deoxy-D-xylulose-5-phosphate synthase OS=Acidoba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
back to top