CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_COLP3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = -1
Query:  280 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGD----------RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 738
            D PS  R+PRGNG G +LP  ++   +E+GKG  ++              +AIL +GS++ +   AA      +++ T+ D RF KPLD  LI  L  +H+ L+TVE+ ++ GG GS V  +L   G    P+ + ++ + D ++ HG+  +   E  L +  I
Sbjct:  468 DGPSVVRYPRGNGTGEILPSVDE--TIELGKGVTILTATVIESQEQTNKSIAILSFGSMLGEAKKAA-----LELNATLVDMRFVKPLDETLIDTLNAKHDCLVTVEDNAIAGGAGSGVNEYLLAQG---KPVTILNIGVTDHFVKHGTQEEMHHELELDAEGI 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BUCAI (1-deoxy-D-xylulose-5-phosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 51/148 (34.46%), Postives = 84/148 (56.76%), Query Frame = -1
Query:  325 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 765
            M+ T  + +  PS  R+P+G G+G +L   N+   + IGK  I   G ++AIL +G ++     AA  L +     T+ D RF KPLD  +I +L+++++  IT+EEG + GG GS V  F+ ++ I    L + ++ LPD +I  G+
Sbjct:  447 MLYTGYMHNKGPSVVRYPKGYGVGELLMPMNR---IPIGKSLIKRRGKKIAILNFGILLHNAYCAAEKLDA-----TLVDMRFVKPLDKSMILKLSSQNKFFITLEEGVISGGAGSAVNEFIMVNKIF---LPVLNIGLPDTFIPQGT 583          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_LISMO (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria monocytogenes GN=dxs PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.484e-14
Identity = 51/173 (29.48%), Postives = 91/173 (52.60%), Query Frame = -1
Query:  250 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 765
            ++ TA   +D P   R+PRG   G  +  +N  T + IG+   +++     IL +G  ++  + AA  L+ +   V V +AR+ KPLD  L+ ++  +   ++TVEE  + GGFG+ V  F+  +   D  + +  + LPD +I HGS +  LE  G+S+  +   +  +L +
Sbjct:  432 LMDTAFSYNDGPFAIRYPRGEAPGVQVVESN--TLIPIGQWETIIQPLDAVILTFGPTIELALKAAEQLEIEGYRVGVINARYIKPLDEALLHKILKQKIPILTVEESLLKGGFGASVLEFIEANNYRD--VIMHRIGLPDEFISHGSVSIILESFGISTTGLVLKIKEMLAQ 600          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_STRGG (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 52/169 (30.77%), Postives = 89/169 (52.66%), Query Frame = -1
Query:  250 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 753
            A  +DD P+  RF +G  +G  +    +   ++I +       D V I+  G++   C+  A++L +Q IS TV D R+ KP+D + +  LA  H +++TVE+ S  GG GS V   L  +G+    + LR   +P  ++DH S  + + E GL++  I+  V  L+ +
Sbjct:  460 AVAVDDAPTVVRFSKG-AVGPAVKAVGRAGGMDILRRPTAARPD-VLIVSVGALAPMCLEIADLLDAQGISSTVVDPRWVKPVD-EALAPLAERHRVVVTVEDNSRAGGVGSAVAQSLRDAGV---DVPLRDFGIPPVFLDHASRGEVMAEIGLTAPDIARQVTGLVAK 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_LAWIP (1-deoxy-D-xylulose-5-phosphate synthase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 48/138 (34.78%), Postives = 78/138 (56.52%), Query Frame = -1
Query:  325 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 732
            P   R+P+GNG+G  LP  N+ TPL   +G +L EG    I+  GS+V     AA  L+ + ++S+ V D+R+  PL    + +LAN    ++ +EE ++ GGF S V      +  L G  +++ + +P+ +IDHGS
Sbjct:  478 PLAIRYPKGNGVGVTLP--NESTPLPF-EGELLKEGHDAIIIAIGSMVMPAYSAAQQLQEEKNLSIAVFDSRWISPLPQHQLIELANTFNNILLIEENALAGGFSSAVVELFADNQCLHGQ-RIQRIGIPNYFIDHGS 611          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DESVV (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 52/150 (34.67%), Postives = 76/150 (50.67%), Query Frame = -1
Query:  295 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 738
            D P   R+PRG G G  +P     +PL +G G +L EG+ VA++  GS V   + AA  L  +     TV DAR+ KPL    +  +   H+ L+ VEE ++ GGF S V   L     L G   +R + LPD +++ G+  +     GL
Sbjct:  473 DAPLAIRYPRGVGFG--IPLAESPSPLPVGVGEVLKEGEGVAVIAVGSRVHPSLEAAERLAEETGRHATVFDARWVKPLPEAQLLDIVARHDALLFVEENALAGGFSSAVLELLADRNALSGK-HIRRIGLPDEFVEQGTQKELRVSLGL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DESVH (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 52/150 (34.67%), Postives = 76/150 (50.67%), Query Frame = -1
Query:  295 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQ-DISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 738
            D P   R+PRG G G  +P     +PL +G G +L EG+ VA++  GS V   + AA  L  +     TV DAR+ KPL    +  +   H+ L+ VEE ++ GGF S V   L     L G   +R + LPD +++ G+  +     GL
Sbjct:  473 DAPLAIRYPRGVGFG--IPLAESPSPLPVGVGEVLKEGEGVAVIAVGSRVHPSLEAAERLAEETGRHATVFDARWVKPLPEAQLLDIVARHDALLFVEENALAGGFSSAVLELLADRNALSGK-HIRRIGLPDEFVEQGTQKELRVSLGL 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PARUW (1-deoxy-D-xylulose-5-phosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = -1
Query:  262 RPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 735
            RP+  R+P           N+     E+GKG +L+EG  + I+  G + Q  +   ++L    I  TV D  F KPLD++L  +L   H  ++T+EE S V G GS + +FL   G     +++ ++ +P+ ++DHG   D L E GL    I   + S
Sbjct:  469 RPTAIRYPNL----MTEEFNHPICERELGKGEVLIEGTEILIVALGHMNQAALKVRDLLAQTGIEATVLDPIFVKPLDSELFCKLLLNHNKIVTIEEHSVVSGMGSIINNFLVGQGF--NQIQVLNLGIPEAFLDHGRNQDLLNEIGLVPEKIFRQIQS 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHLTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis GN=dxs PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 54/165 (32.73%), Postives = 77/165 (46.67%), Query Frame = -1
Query:  262 PSCFRFPRGNGIGAVLPXNNKGT-------PLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 732
            P   R+P        +P N K +       P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS    FL    I    L   S+ +PD +I HG+P   L   GL+S HI+  +LS
Sbjct:  470 PCAIRYPN-------IPANEKASNSFFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVL---SLGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHLTB (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 54/165 (32.73%), Postives = 77/165 (46.67%), Query Frame = -1
Query:  262 PSCFRFPRGNGIGAVLPXNNKGT-------PLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 732
            P   R+P        +P N K +       P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS    FL    I    L   S+ +PD +I HG+P   L   GL+S HI+  +LS
Sbjct:  470 PCAIRYPN-------IPANEKASNSSFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVL---SLGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_COLP38.699e-1532.321-deoxy-D-xylulose-5-phosphate synthase OS=Colwell... [more]
DXS_BUCAI8.699e-1534.461-deoxy-D-xylulose-5-phosphate synthase OS=Buchner... [more]
DXS_LISMO1.484e-1429.481-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_STRGG1.938e-1430.771-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS_LAWIP1.938e-1434.781-deoxy-D-xylulose-5-phosphate synthase OS=Lawsoni... [more]
DXS_DESVV1.938e-1434.671-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_DESVH1.938e-1434.671-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_PARUW3.306e-1431.451-deoxy-D-xylulose-5-phosphate synthase OS=Protoch... [more]
DXS_CHLTR9.618e-1432.731-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLTB9.618e-1432.731-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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