CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHLTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 54/165 (32.73%), Postives = 77/165 (46.67%), Query Frame = -1
Query:  262 PSCFRFPRGNGIGAVLPXNNKGT-------PLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 732
            P   R+P        +P N K +       P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS    FL    I    L   S+ +PD +I HG+P   L   GL+S HI+  +LS
Sbjct:  470 PCAIRYPN-------IPANEKASNSFFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVL---SLGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHLT2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 54/165 (32.73%), Postives = 77/165 (46.67%), Query Frame = -1
Query:  262 PSCFRFPRGNGIGAVLPXNNKGT-------PLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 732
            P   R+P        +P N K +       P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS    FL    I    L   S+ +PD +I HG+P   L   GL+S HI+  +LS
Sbjct:  470 PCAIRYPN-------IPANEKASNSSFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVL---SLGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRASN (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain EAN1pec) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 49/170 (28.82%), Postives = 86/170 (50.59%), Query Frame = -1
Query:  232 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALL 738
            D P+  R+P+G         +  G    + +         V ++  G++   C+  A  + SQ I +TV D R+ KPLD  L+  LA +H++++TVE+ G VGG G+ V   L  +   D  + +R   +  R++DHG   D L E GL+ + ++  V+  + + + AL+
Sbjct:  466 DGPTVVRYPKGKVAADSPAIDQVGGVDVLYRAPAAARHREVLLVSIGAMAPTCLDVAERVASQGIGITVVDPRWVKPLDPALV-DLARDHDLVVTVEDNGRVGGVGACVAQLLRDA---DVDVPVREFGVAQRFLDHGKRDDVLAEVGLAPQDLARKVIEAVAKRQHALM 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CLOD6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium difficile (strain 630) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 48/164 (29.27%), Postives = 88/164 (53.66%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGP--LKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P   R+PRG+     L     G  + +GK  +L +G    IL  GS+V+  + A  +L  + I+ T+ +ARF KP+D  +++ L   H+ ++T+E+  V GGFGS +  F     I+D    + + ++ +P+ ++ HG+  +  +  GLS + I+  +  L+
Sbjct:  464 DCPLAIRYPRGSSY--YLDKGEYGE-IVLGKYEVLDDGQDTVILCIGSMVKHALEAKEILSREGINPTIVNARFLKPIDEGMLKALLKNHKNVVTIEDNIVTGGFGSRINKF-----IIDNEYNVNILNIAIPEEFVKHGNIDELYDFVGLSPKSIADKIRKLV 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_FRASC (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain CcI3) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.798e-13
Identity = 49/169 (28.99%), Postives = 87/169 (51.48%), Query Frame = -1
Query:  235 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 738
            D P+  RFP+G     V   +  G    + +   + +   V ++  G++   C+  A  + SQ I +TV D R+ KPLD  LI  LA  H++++TVE+ G VGG G+ +   L  +   D  + LR   +  R++DHG   + + E GL+ + ++  V+  + + + A+
Sbjct:  466 DGPTVVRFPKGKVAVDVPAIDTVGGVDVLYRSPKVAQRREVLLVSIGAMAATCLEVAERVASQGIGITVVDPRWVKPLDPALI-DLARAHDLVVTVEDNGRVGGVGAALAQLLRDA---DVDVPLRDFGIAQRFLDHGKRDEVMAEVGLAPQDLARKVVEAVAKRQPAI 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.655e-13
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = -1
Query:  328 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHG 732
            P   R+PRG G G  +    +   LE G+ R++ EG  +AI+  G  V       ++L  + ++  + DARF KPLD  +I   A ++  L+T+E+ S+ GGFGS +   L   GI     +L  + LPD +++HG
Sbjct:  466 PVAIRYPRGVGEGVRIKSERQ--LLEPGQSRLIAEGQDLAIIAVGRGVSIARDVVDLLAGKGVNPLLVDARFVKPLDRRVIAGAAQKYHRLLTIEDNSLAGGFGSAIGEMLVEEGI---DAELLHIALPDEFVEHG 596          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHRSD (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = -1
Query:  268 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 756
            +AA     P+  R+PRG G G  +  N +  P+   + R       VA+L +GS+       A  L +  +++     R  KPLD + I   A +H +L+T+EE  V GG GS V   L   G+    +++ ++ LPD +++HG PA+ L   GL +  I   V
Sbjct:  487 SAAYHHPGPAAVRYPRGTGPGTQVASNLEALPIGEAETRRSGREGGVALLAFGSMNGPAGEVAERLDATHLNM-----RSVKPLDREAILAAARDHRLLVTLEESVVAGGAGSGVNELLAAEGV---QVEVLNLGLPDDFVEHGKPAELLAACGLDAEGIETAV 642          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MYCS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium smegmatis GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.234e-13
Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = -1
Query:  268 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 753
            A  ++D P+  RFP+G+ +G  +P   +   +++           V ++  GS  +  +  A +L+SQ I VTV D R+  P+  + +  LA +H++++TVE+ G  GG GS V   L  + I    +  R + +P ++ DH S  + L E GL+ RHI+  +
Sbjct:  459 ALAVNDGPTAIRFPKGD-VGEDIPAVQRRDGVDVLAVPATGLTHDVLLVAVGSFAKMALAVAELLRSQGIGVTVVDPRWVLPV-PEALADLARDHKLVVTVEDNGLHGGIGSSVSAALRHAEI---DVPCRDVGVPQQFQDHASRGEVLAEVGLTDRHIARQI 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_THESQ (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga sp. (strain RQ2) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P   R+P+ +  G V         +++G  +IL  G   AI+  G+++       N +    + VTV +A   KPLDT +++++A EH+++ITVEE   +GGFGS V   L   G      K+ ++ + D ++ HGS  + L   GL S  ++ TVL+ +
Sbjct:  449 DGPVAIRYPKESFYGEVEFFLENMKEIDLG-WKILKRGREAAIIATGTIL-------NEVLKIPLDVTVVNALTVKPLDTTVLKEIAREHDLIITVEEAMKIGGFGSFVAQRLQEMGWQG---KIVNLGVEDIFVPHGSRKELLSMLGLDSEGLTKTVLTYI 599          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DESHY (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 52/160 (32.50%), Postives = 81/160 (50.62%), Query Frame = -1
Query:  292 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLS 768
            HM+ T+  +D  P   R+PR  G G  L    +  P  +GK  IL EG  + ++G G +V  C+ AA  L+ + +  TV + R+  PLD + I + A   + +ITVE+  + GG GS V   L   G+ D  ++       D Y+D G+ +   +  GLS
Sbjct:  455 HMLYTSLQLDG-PVALRYPRSVGQGVELTEELRELP--VGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGMGSAVMEVLGDEGLTDVVVERLGY---DEYVDQGAISLLHQGYGLS 608          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_CHLTA9.618e-1432.731-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLT29.618e-1432.731-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_FRASN1.256e-1328.821-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]
DXS_CLOD61.256e-1329.271-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_FRASC2.798e-1328.991-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]
DXS_SYNWW3.655e-1333.821-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]
DXS_CHRSD4.773e-1331.101-deoxy-D-xylulose-5-phosphate synthase OS=Chromoh... [more]
DXS_MYCS26.234e-1330.061-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_THESQ8.142e-1331.481-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_DESHY8.142e-1332.501-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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