CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DESHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 52/160 (32.50%), Postives = 81/160 (50.62%), Query Frame = -1
Query:  292 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLS 768
            HM+ T+  +D  P   R+PR  G G  L    +  P  +GK  IL EG  + ++G G +V  C+ AA  L+ + +  TV + R+  PLD + I + A   + +ITVE+  + GG GS V   L   G+ D  ++       D Y+D G+ +   +  GLS
Sbjct:  455 HMLYTSLQLDG-PVALRYPRSVGQGVELTEELRELP--VGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGMGSAVMEVLGDEGLTDVVVERLGY---DEYVDQGAISLLHQGYGLS 608          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CLOPH (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 46/166 (27.71%), Postives = 78/166 (46.99%), Query Frame = -1
Query:  244 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 738
            D P   R+P+     A L   +    +  GKG ++   + +A++  GS+V+  VL    L    +  T+ +ARF  PLD +++ QL   H + +T+EE    GGFG  V  FL         +K  ++ +P+ +++HG      E+ GL +  I   +    G  K
Sbjct:  465 DGPIAIRYPKNT---AYLGLEDHKKEIIYGKGELIASEEEIALIAIGSMVETAVLVREHLHKLGLKATLVNARFISPLDEEMLHQLTKSHTLFVTMEENVKRGGFGEEVSVFLCEHDYQG--IKHLNISIPNMFVEHGDRTLLKEKLGLDAESIVDKICRQRGMQK 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACFR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides fragilis GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 44/149 (29.53%), Postives = 82/149 (55.03%), Query Frame = -1
Query:  325 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQD-ISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 765
            ++ TA + D  P   R+PRG G  +++        + +GKGR L +G+ +A++  G + +    A    ++   ISV   D RF KPLD +L+ ++  +   ++T+E+G + GG G  +  F+  +G      ++R + +PD++I+HGS
Sbjct:  467 LMYTAQLPDKGPFAIRYPRGRG--SLVDWECPLEEIPVGKGRKLKDGNDLAVITIGPIGKLAARAIERAEADTGISVAHYDLRFLKPLDEELLHEVGKKFRHIVTIEDGIIKGGMGCAILEFMADNGYYP---EIRRIGVPDQFIEHGS 610          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACFN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 44/149 (29.53%), Postives = 82/149 (55.03%), Query Frame = -1
Query:  325 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQD-ISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 765
            ++ TA + D  P   R+PRG G  +++        + +GKGR L +G+ +A++  G + +    A    ++   ISV   D RF KPLD +L+ ++  +   ++T+E+G + GG G  +  F+  +G      ++R + +PD++I+HGS
Sbjct:  467 LMYTAQLPDKGPFAIRYPRGRG--SLVDWECPLEEIPVGKGRKLKDGNDLAVITIGPIGKLAARAIERAEADTGISVAHYDLRFLKPLDEELLHEVGKKFRHIVTIEDGIIKGGMGCAILEFMADNGYYP---EIRRIGVPDQFIEHGS 610          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS2_KITGR (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Kitasatospora griseola GN=dxs2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 52/170 (30.59%), Postives = 88/170 (51.76%), Query Frame = -1
Query:  256 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVA---ILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 753
            A  + D P+  R+ +GN +G  +P       +++ +       D  A   I+  G++   C+ AA +L  Q IS TV D R+ KP+D  L   LA +H +++TVE+ G  GG GS +   L  +   D  + LR   +P  ++DH S  + L+E GL++  I+  + +L+
Sbjct:  461 AVEVADAPTVVRYSKGN-VGPAVPAVGTVGGMDVLRRPEADSADEAADVLIVSIGAMAPTCLEAAELLAQQGISSTVVDPRWVKPVDAAL-PGLAAQHRLVVTVEDNGRAGGVGSAIAQALRDA---DVDVPLRDFGIPQEFLDHASRGEILDEIGLTAPAIAKKIEALV 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_THEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 50/162 (30.86%), Postives = 84/162 (51.85%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P   R+P+ +  G V         +++G  +IL  G   AI+  G+++       N +    + VTV +A   KPLDT +++++A +H+I+ITVEE   +GGFGS V   L   G      K+ ++ + D ++ HG   + L   GL S  ++ TVL+ +
Sbjct:  449 DGPVAIRYPKESFYGEVESILENMKKIDLG-WKILRRGKEAAIIATGTIL-------NEVLKIPLDVTVVNALTVKPLDTAVLKEIARDHDIIITVEEAMRIGGFGSFVAQRLQEMGWQG---KIVNVGVEDLFVPHGGRKELLSTLGLDSEGLTKTVLTYI 599          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACV8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 48/170 (28.24%), Postives = 87/170 (51.18%), Query Frame = -1
Query:  262 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQD-ISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 765
            ++ TA + D  P   R+PRG G  +++        +EIGKGR L EG  +A++  G +  Q   A    + +   S+   D RF KPLD  ++ ++    + ++TVE+G + GG GS +  F+  +   +   +++ + LPD+++ HGS  +     G+    I   ++S
Sbjct:  467 LMYTAQLPDKGPFVIRYPRGRG--SLVDWKCPMQEIEIGKGRKLKEGKDIAVITLGPIGVQAEKAITHAEQETGKSIAHYDLRFLKPLDESMLHEIGKRFKQVVTVEDGVLKGGMGSAILEFMADN---EYNPQIKRIGLPDQFVQHGSVKELYHICGMDEEGIYKVLIS 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_THEMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga maritima GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            D P   R+P+ +  G V         +++G  +IL  G   AI+  G+++       N +    + VTV +A   KPLDT +++++A +H+++ITVEE   +GGFGS V   L   G      K+ ++ + D ++ HG   + L   GL S  ++ TVL+ +
Sbjct:  449 DGPVAIRYPKESFYGEVESLLENMKEIDLG-WKILKRGREAAIIATGTIL-------NEVLKIPLDVTVVNALTVKPLDTAVLKEIARDHDLIITVEEAMKIGGFGSFVAQRLQEMGWQG---KIVNLGVEDLFVPHGGRKELLSMLGLDSEGLTKTVLTYI 599          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CORJK (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium jeikeium (strain K411) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 51/167 (30.54%), Postives = 91/167 (54.49%), Query Frame = -1
Query:  265 AAVIDDRPSCFRFPRGN---GIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 753
            A  +DD P+  RFP+G+   GI AV   ++     E    +   EG RV I+ +G++ +Q + AA  L   + S TV D  +  P   D + + A   ++++T+E+  V GG GS + + L+ +GI    + +R++ +P  ++ HGS  + LE+ GL +  ++ TV+
Sbjct:  465 AVAVDDAPTVVRFPKGDAPAGIPAVREEDDYDVLFEQSGDK--SEG-RVLIVSFGALSKQALGAAQALCDANFSATVVDPHWVVP-TADSLLEFARGFDLIVTIEDNGVHGGAGSRLHYDLSQAGI---DVPVRNLGVPQEFLAHGSRGEVLEDLGLDAETVARTVV 624          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACTN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides thetaiotaomicron GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 44/169 (26.04%), Postives = 88/169 (52.07%), Query Frame = -1
Query:  265 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQD-ISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 765
            ++ TA + D  P   R+PRG G+  ++        + +GKGR L +G  +A++  G +  +   A    +S+   S+   D RF KPLD +L+ ++      ++T+E+G++ GG GS V  F+      +    ++ + +PD+++ HG+ A+  +  G+    ++  +L
Sbjct:  467 LMYTAQLPDKGPFVLRYPRGRGV--LVDWKCPLEEIPVGKGRKLKDGKDIAVISIGPIGNKARSAIARAESESGRSIAHYDLRFLKPLDEELLHEVGRTFRHIVTIEDGTIQGGMGSAVLEFMADH---EYTPTVKRIGIPDKFVQHGTVAELYQLCGMDEDSLTKELL 630          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_DESHD8.142e-1332.501-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_CLOPH8.142e-1327.711-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_BACFR8.142e-1329.531-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS_BACFN8.142e-1329.531-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS2_KITGR8.142e-1330.591-deoxy-D-xylulose-5-phosphate synthase 2 OS=Kitas... [more]
DXS_THEP11.389e-1230.861-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_BACV81.389e-1228.241-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS_THEMA2.369e-1230.251-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_CORJK2.369e-1230.541-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_BACTN3.094e-1226.041-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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