CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CHLMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia muridarum GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 43/140 (30.71%), Postives = 71/140 (50.71%), Query Frame = -1
Query:  262 NNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 678
            N   +P+  G+  +L +GD + ++  G +    +     L    IS TV D  F KPLDT+L++ L + H  ++ +EE S+ GG  +    FL    +    L   S+ +PD +I HG+P   L   GL+S  I+  +L+
Sbjct:  486 NPSFSPIFPGEAEVLCQGDDLLLIALGHMCDTALAVKEQLLDHGISTTVVDPIFIKPLDTELLQTLLSHHSKVVVLEEHSIHGGLSAEFLLFLNNHNLKTDVL---SLGIPDIFIPHGNPETILNMIGLTSDQITLKILA 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_AZOPC (1-deoxy-D-xylulose-5-phosphate synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 40/148 (27.03%), Postives = 78/148 (52.70%), Query Frame = -1
Query:  280 RFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 720
            R+P+G   G +         L +GKGR L EG  +A++  G++      A  +++   ISV   D  + KP+D +L+ ++   +  ++ +E+G++ GG G+ V  F+  +G      K++ + +PD +I HG+ A+  +  G+  + I
Sbjct:  482 RYPKG--YGELKNWEYSFEALPVGKGRKLKEGKEIAVVSIGTIGNLARKAIRLVEKLGISVAHYDMIYLKPIDEELLHEIGKNYRCVVVIEDGTIKGGLGTAVIEFMVQNGY---DPKIKQIGVPDEFIPHGTIAELYKLCGMDIKSI 624          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MACCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Macrococcus caseolyticus (strain JCSC5402) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.893e-12
Identity = 46/166 (27.71%), Postives = 84/166 (50.60%), Query Frame = -1
Query:  280 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKG--RILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHI 768
            H++  A    + P   R+PRGNG G  +       P  + +G   +L EG  V +L +G  ++        L  + +S+ V +ARF KPLD   +   A  +  ++TVEE  + GGFG+ + +  +    LD  + ++ + + D YI+HG  +  L++ G++  ++
Sbjct:  455 HLLYNAFYEYEGPIAIRYPRGNGYGVKID----SIPNSVVRGDWEVLHEGTDVIVLSFGPTLKLIEAVREELLKEGVSIEVVNARFIKPLDYHYLAAAAKRNIPVLTVEEAMLSGGFGAAISNHYS---DLDLDVHVKRIGIDDEYIEHGDVSMLLDDIGINKANL 613          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MYCA9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.002e-12
Identity = 48/164 (29.27%), Postives = 86/164 (52.44%), Query Frame = -1
Query:  268 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEI-GKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 753
            A  +DD P+  RFP+G  +G  +P   +   ++I  +    +  D V ++  GS     +  A+ L  Q I VTV D R+  P+   ++ +LA +H +++T+E+  V GG GS V   +  +   D  +  R + +P ++++H S    LEE GL+ +HI+  +
Sbjct:  460 ALAVDDGPTALRFPKGE-VGEDIPAIERRDGVDILARPASGLHAD-VLLVAVGSFASTALATADRLGKQGIGVTVVDPRWVLPVPPHVV-ELAGQHRLVVTLEDSGVHGGAGSAVTAAMQDA---DVDIPSRDIGVPQQFLEHASRGQVLEELGLTDQHIARKI 617          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CLOK5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 44/160 (27.50%), Postives = 80/160 (50.00%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P   R+PRG     + P  +     E G+   ++   ++A++  G +V+  VLAA  L+   I V V  A F KPLD  ++++L  E   +IT+E+  + GG GS++  ++     L   + + ++   D ++ HG P+   +  GL +  I   VL ++
Sbjct:  466 PIAIRYPRGGDNVYLTPLED----FEFGRWEYILNKGKIALVAQGRMVEHAVLAAEKLEQMGILVRVISACFIKPLDKVMLKKLIEEDVTIITIEDNIIRGGLGSYILEYV---NTLHRKVDVINLGFKDEFVRHGKPSILYKLYGLDTGSIVDKVLKVV 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CLOK1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 44/160 (27.50%), Postives = 80/160 (50.00%), Query Frame = -1
Query:  256 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 732
            P   R+PRG     + P  +     E G+   ++   ++A++  G +V+  VLAA  L+   I V V  A F KPLD  ++++L  E   +IT+E+  + GG GS++  ++     L   + + ++   D ++ HG P+   +  GL +  I   VL ++
Sbjct:  466 PIAIRYPRGGDNVYLTPLED----FEFGRWEYILNKGKIALVAQGRMVEHAVLAAEKLEQMGILVRVISACFIKPLDKVMLKKLIEEDVTIITIEDNIIRGGLGSYILEYV---NTLHRKVDVINLGFKDEFVRHGKPSILYKLYGLDTGSIVDKVLKVV 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HELPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori J99 GN=dxs PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 45/166 (27.11%), Postives = 83/166 (50.00%), Query Frame = -1
Query:  244 DDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 741
            D  P  FR+PRG+   A+     + +   +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S +  FL+   IL     ++S  + D +I HG+ A   +  GL +  ++  +L  LG+ +
Sbjct:  458 DSSPCAFRYPRGSF--ALKEGVFEPSGFVLGRSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDHNLSAIIAPYQKLYVFSDNYKLGGVASAILEFLSEQNILK---PVKSFEITDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HELPH (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori (strain HPAG1) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 45/166 (27.11%), Postives = 83/166 (50.00%), Query Frame = -1
Query:  244 DDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 741
            D  P  FR+PRG+   A+     + +   +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S +  FL+   IL     ++S  + D +I HG+ A   +  GL +  ++  +L  LG+ +
Sbjct:  458 DSSPCAFRYPRGSF--ALKEGVFEPSGFVLGRSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIIAPYQKLYVFSDNYKLGGVASAILEFLSEQNILK---PVKSFEIMDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_DEIGD (1-deoxy-D-xylulose-5-phosphate synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = -1
Query:  253 PSCFRFPRGNGIGAVLPXNNKGTPLEI--GKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 732
            P   R+PRGN     +    +GT  E+  G    L +GD V IL  G  ++  + AA  L      V V +ARF KPLD  ++R++A +   L+TVE+ + VGGFGS V   L+  G+      +R + +PD + DH +       +G+ +  I  TVL+ LG
Sbjct:  477 PFAIRYPRGN-----VERVPEGTWPELRWGTWERLQDGDDVVILAGGKALEYALKAARDLPG----VGVVNARFVKPLDQGMLREVATKARALVTVEDNTVVGGFGSAVLEALSALGL---RTPVRVLGIPDAFQDHATVESVHARAGIDAPAI-RTVLAELG 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MARMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Marinomonas sp. (strain MWYL1) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = -1
Query:  268 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDR-VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 732
            P+  R+PRG G G  +   +  + L+IGK R L  G   + I G+G      + AAN L +     T+ D RF KP+D + +     + ++++TVEE ++ GG GS V   L  + I    L L    LPD+Y +H S A  L+  GL +  I  ++
Sbjct:  473 PAAVRYPRGTGQGVDI--ESTLSTLKIGKSRTLRTGQSGIVICGFGRPTYDALKAANTLDA-----TLLDMRFVKPIDEETL-LTHRDAKLIVTVEENAIMGGAGSAVSELLIANNINIPTLHLG---LPDQYEEHASHASMLKRVGLDADGIQKSI 618          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_CHLMU4.041e-1230.711-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_AZOPC5.278e-1227.031-deoxy-D-xylulose-5-phosphate synthase OS=Azobact... [more]
DXS_MACCJ6.893e-1227.711-deoxy-D-xylulose-5-phosphate synthase OS=Macroco... [more]
DXS_MYCA99.002e-1229.271-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_CLOK51.176e-1127.501-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOK11.176e-1127.501-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_HELPJ1.536e-1127.111-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_HELPH1.536e-1127.111-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_DEIGD1.536e-1134.361-deoxy-D-xylulose-5-phosphate synthase OS=Deinoco... [more]
DXS_MARMS2.005e-1133.121-deoxy-D-xylulose-5-phosphate synthase OS=Marinom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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