CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NOCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 47/165 (28.48%), Postives = 86/165 (52.12%), Query Frame = -1
Query:  265 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDR-VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 753
            A  +DD P+  RFP+G+    +   +  G     G   ++  G + V ++  G++    V  A  L +Q I VTV D R+ KP+D  ++ +LA EH +++++E+ G  GG G+ +   L  +G+   P +L    +P +++ H   A  LE  GL+ + I+  ++
Sbjct:  460 AVEVDDAPTVVRFPKGSPPEDIEAVDRAG-----GADILVRNGTKDVLVVAVGAMGTTAVDVAQRLTAQGIGVTVVDPRWVKPVDPAIV-ELAREHRLVVSIEDNGETGGCGAVLLQTLNAAGV-HTPFRLHG--IPQQFLGHAKRAAILERIGLTPQAIALRIV 615          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NITSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitratiruptor sp. (strain SB155-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 47/163 (28.83%), Postives = 84/163 (51.53%), Query Frame = -1
Query:  256 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGD-RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 738
            DRP  FR+PRG+    +L    +  P E+GK  +L+E +  V  +GYG+ V +   A   +K  D  V++ D RF KPLD +L+++L+  + +  +  +   +GG  S +         L+ P+++ +    D++I HG   D  +  GL  + ++  V S +
Sbjct:  450 DRPCAFRYPRGS---FILDDEFEAKPFELGKAELLVESEGDVLFVGYGNGVGR---AYETMKHIDEPVSLLDLRFVKPLDVELLQELSKRYRQWFVFSDSAKLGGVASALLE-------LELPVEIVTFEYEDQFIPHGKVIDVEKALGLLPQQLAKRVKSFI 599          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HELPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori (strain G27) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 46/169 (27.22%), Postives = 82/169 (48.52%), Query Frame = -1
Query:  244 DDRPSCFRFPRGNGI---GAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 741
            D  P  FR+PRG+ +   G   P         +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S +  FL+   IL     ++S  + D +I HG+ A   +  GL +  ++  +L  LG+ +
Sbjct:  458 DSSPCAFRYPRGSFVLKEGVFEPSG-----FVLGQSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIVAPYQKLYVFSDNYKLGGVASAILEFLSEQNILK---PVKSFEIIDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HELPY (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 45/166 (27.11%), Postives = 83/166 (50.00%), Query Frame = -1
Query:  244 DDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 741
            D  P  FR+PRG+   A+     + +   +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S +  FL+   IL     ++S  + D +I HG+ A   +  GL +  ++  +L  LG+ +
Sbjct:  458 DSSPCAFRYPRGSF--ALKEGVFEPSGFVLGQSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIVAPYQKLYVFSDNYKLGGVASAILEFLSEQNILK---PVKSFEIIDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER 618          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RHOSR (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.468e-11
Identity = 50/166 (30.12%), Postives = 85/166 (51.20%), Query Frame = -1
Query:  268 AAVIDDRPSCFRFPR---GNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 753
            A  +DD P+  RFP+   G+ + AV   +     L    GR     + V I+  G+     + AA  L+ Q IS TV D R+  P+   L++ LA ++ +++TVE+ G  GG GS V   L  +G+    +  R + +P +++DH S A    E GL+++ ++  +
Sbjct:  461 ALAVDDGPTALRFPKGTVGDDVPAVSRLDGVVDILRAPSGR-----NDVLIVSVGAFAGLALAAAERLEQQGISATVVDPRWVLPVPESLVK-LAEDYTMVVTVEDSGLHGGVGSTVSAALRAAGV---DVPCRDLGVPQQFLDHASRAQIHAELGLTAQDVARQI 617          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ARTS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Arthrobacter sp. (strain FB24) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = -1
Query:  262 AAVIDDRPSCFRFPRGNGIGA---VLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 753
            A  I+D P+  R+ +GN +GA    L   + G  +   +     E D V I+  G++ +  +  +N L +Q IS TV D R+  P+   +I  LA  H ++I +E+G   GG GS +   +  +G+      L  + LP  ++DHG+ A  LE  GL++R I+  V++
Sbjct:  469 AVAIEDAPTVVRYSKGN-VGAEVEALERLSDGVDVLARRPAGSSEND-VLIVSVGAMSELALDVSNRLGAQGISSTVVDPRWLLPVRKSII-ALAARHRLVICIEDGVRAGGVGSRIRQEMRAAGV---DTALNEVGLPVEFLDHGTRAQVLERVGLTARQITHDVVA 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MYCSS (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain MCS) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 44/160 (27.50%), Postives = 82/160 (51.25%), Query Frame = -1
Query:  268 IDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 744
            ++D P+  RFP+G+ +G  +P   +   +++         D V ++  G      +  A  L+ Q I VTV D R+  P+  +++ + A  H++++TVE+ G  GG GS V   L  + +    +  R + LP ++ DH S  + L + G++ R+IS  +
Sbjct:  462 VNDAPTAIRFPKGD-VGEDIPAVRRHRGVDVLAEPADGLSDDVLLVAVGPFASMALTVAERLRKQGIGVTVVDPRWVLPV-PEVLTEFAAAHKLVVTVEDNGLHGGIGSSVSAALRHAEV---DVPCRDVGLPQQFFDHASRGEVLADVGVTDRNISRQI 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MYCSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain KMS) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 44/160 (27.50%), Postives = 82/160 (51.25%), Query Frame = -1
Query:  268 IDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 744
            ++D P+  RFP+G+ +G  +P   +   +++         D V ++  G      +  A  L+ Q I VTV D R+  P+  +++ + A  H++++TVE+ G  GG GS V   L  + +    +  R + LP ++ DH S  + L + G++ R+IS  +
Sbjct:  462 VNDAPTAIRFPKGD-VGEDIPAVRRHRGVDVLAEPADGLSDDVLLVAVGPFASMALTVAERLRKQGIGVTVVDPRWVLPV-PEVLTEFAAAHKLVVTVEDNGLHGGIGSSVSAALRHAEV---DVPCRDVGLPQQFFDHASRGEVLADVGVTDRNISRQI 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MYCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain JLS) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 44/160 (27.50%), Postives = 82/160 (51.25%), Query Frame = -1
Query:  268 IDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 744
            ++D P+  RFP+G+ +G  +P   +   +++         D V ++  G      +  A  L+ Q I VTV D R+  P+  +++ + A  H++++TVE+ G  GG GS V   L  + +    +  R + LP ++ DH S  + L + G++ R+IS  +
Sbjct:  462 VNDAPTAIRFPKGD-VGEDIPAVRRHRGVDVLAEPADGLSDDVLLVAVGPFASMALTVAERLRKQGIGVTVVDPRWVLPV-PEVLTEFAAAHKLVVTVEDNGLHGGIGSSVSAALRHAEV---DVPCRDVGLPQQFFDHASRGEVLADVGVTDRNISRQI 616          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CORGB (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium glutamicum (strain R) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = -1
Query:  256 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 753
            A  IDD P+  RFP+G+    ++  +     +++       E D   V I+  G      +  A+ +    ++VTV D R+  P+   L+  L+++H+++IT+E+G + GG GS +   L  S + D P   R + +P +Y+DH S ++   + GL +  I  TV+  L
Sbjct:  462 AISIDDGPTVVRFPKGDLPTPIVAIDTLEDGVDVLAYEDATEDDAPSVLIVAVGERATVALEVASRITQHGVNVTVVDPRWIVPIPQSLVA-LSDDHDLVITIEDGVIHGGVGSLLSDALNASEV-DTPR--RQIAVPQKYLDHASRSEVFADYGLDADGIETTVVGWL 626          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_NOCSJ2.619e-1128.481-deoxy-D-xylulose-5-phosphate synthase OS=Nocardi... [more]
DXS_NITSB2.619e-1128.831-deoxy-D-xylulose-5-phosphate synthase OS=Nitrati... [more]
DXS_HELPG2.619e-1127.221-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_HELPY3.421e-1127.111-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_RHOSR4.468e-1130.121-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]
DXS_ARTS25.835e-1130.951-deoxy-D-xylulose-5-phosphate synthase OS=Arthrob... [more]
DXS_MYCSS7.621e-1127.501-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSK7.621e-1127.501-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSJ7.621e-1127.501-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_CORGB7.621e-1128.401-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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