CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1147..1914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CLAMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 49/166 (29.52%), Postives = 86/166 (51.81%), Query Frame = -1
Query:  262 AAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDR-VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 753
            A  +DD P+  RF +G+ +G  +    +   L+ G   +     + V I+  G +    +  A  L +Q I  TV D R+  P+   ++ +L   H +++T+E+G V GG G+ +   L  +GI  G  +L    LPD ++DHG+ +  LE  GL+ +HI+  V++
Sbjct:  463 AVKVDDAPTVVRFSKGS-VGDEIEAVRR---LDDGVDVLHESASKDVLIVTVGPMATMGIEVAERLAAQGIGATVVDPRWVVPVPRSVV-ELGGTHRLVVTIEDGVVVGGIGTRIRQDLREAGIDTGVTELG---LPDEFLDHGTRSQILERVGLTPQHIARDVVA 620          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_HELHP (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter hepaticus GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 45/168 (26.79%), Postives = 82/168 (48.81%), Query Frame = -1
Query:  268 VATAAVIDDRPSCFRFPRGNGI--GAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 762
            VA A   +D P  FR+PRG+      V   N       +G+  +L  G ++ ++GYG+ V +       L ++    ++ D RF KPLD  ++ ++   H  I +  +   +GG  S +  F+    I D  ++L+S  + DR++ HG+ A   +  GL + H+ + +
Sbjct:  464 VAFAYRYNDSPCAFRYPRGSFTLEEGVFVSNE----FVLGQAEMLKRGKKILLVGYGNGVGRAYKVYQALITEGYEPSLLDLRFVKPLDKHMLNEVFKTHTHICVFSDSYYMGGVASALLEFMAEENIKD--VQLKSFEIKDRFVPHGNTALIEQSLGLDTPHLVSKI 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS1_KITGR (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Kitasatospora griseola GN=dxs1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 50/167 (29.94%), Postives = 85/167 (50.90%), Query Frame = -1
Query:  274 VATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME---GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISA 762
            V  A  ++D P+  RFP+G  +G   P   +     IG   +L        V ++  G +   C+ AA +L +  I+ TV D  + KP+D  L+ +LA  H +++TVE+ G  GG G+ +   +  + + D P  LR + +P  ++ H S  + LEE GL+   ++A
Sbjct:  458 VRQAVAVEDAPTVVRFPKGE-LGPEAPAIER-----IGGVDVLARTGPAPDVLLVAVGPMAAACLDAAALLAADGITATVVDPCWVKPVDPALV-ELAGAHRMVVTVEDNGRTGGVGAALAQAMRDADV-DTP--LRDLGIPQEFLAHASRGEILEEIGLTGTGVAA 614          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_CLAMS7.621e-1129.521-deoxy-D-xylulose-5-phosphate synthase OS=Claviba... [more]
DXS_HELHP9.953e-1126.791-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS1_KITGR9.953e-1129.941-deoxy-D-xylulose-5-phosphate synthase 1 OS=Kitas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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