CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1147..1914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.514e-38
Identity = 80/171 (46.78%), Postives = 114/171 (66.67%), Query Frame = -1
Query:  256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768
            HM  TAA  D  P  FR+PRG GIG  LP   +   LEIGKGRI+  G +VA+L  G+ +++   AA+ L+++ +S T+AD RF KPLDT+LI QL   HE+++T+EE S+GG G+HV  + +  G+ D  LK+R+M LPD +I+  +P  Q +E+GL++ HI  TVL  L
Sbjct:  460 HMTYTAAEHDSGPIAFRYPRGGGIGIDLPETPE--KLEIGKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKAL 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.287e-38
Identity = 92/179 (51.40%), Postives = 117/179 (65.36%), Query Frame = -1
Query:  244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILM---EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD-GPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768
            HM+AT    DD PS  RFPRG G+G   P   +G  L IGKGRI+    EGD +A+L  G+ +  C+ AA  L++   +VTVADARF KPLD +L+ +LA  H  L+TVEEGSVGGFGSHV   +T  G+LD G +K+R+MVLPD YID  + A QL  +GL +  I A V  LLG+ K
Sbjct:  459 HMMATMVAFDDGPSAVRFPRGEGVGVERP--ERGEVLPIGKGRIVHGTGEGD-IALLSLGTRLAACLDAAERLEAAGFTVTVADARFAKPLDRELVLKLAAGHGALVTVEEGSVGGFGSHVLQLVTDEGLLDRGAVKVRAMVLPDIYIDQETQARQLAAAGLDADAIVAKVEGLLGKAK 634          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.551e-38
Identity = 83/178 (46.63%), Postives = 113/178 (63.48%), Query Frame = -1
Query:  235 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 768
            HMV TAAV D  P   R+PRGNG+G  LP   +   L IGKGRI+ EG  VA+L  G+ + + + AA+ L +  +S TVAD RF KPLD  +I+ L   HE+ +T+EEG++GG G+HV    +  G++DG LKLR+M LPD + +H  P  Q  E+GL +  I ATVL+ L R  + L
Sbjct:  460 HMVHTAAVHDSGPIALRYPRGNGVGVALPAAPER--LAIGKGRIVREGKTVALLSLGTRLGEALRAADQLDALGLSTTVADLRFAKPLDEAMIQTLLTSHEVAVTIEEGAIGGLGAHVLTLASDLGLIDGGLKLRTMRLPDAFQEHDKPEKQYAEAGLDAESIVATVLAALHRNSKGL 635          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.551e-38
Identity = 88/179 (49.16%), Postives = 111/179 (62.01%), Query Frame = -1
Query:  253 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDR-------VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 768
            H  ATA   D  P  FR+PRGNGIG  LP   KG  LEIGKGRI+ E  R       VAIL  G  + + + AA+ L +Q + VTVADARF KP+D  L+  LA +HE+ IT+EEG++GGF S V   L  +G+LD  +K R M LPDRYIDH +   Q E++GL++ HI  T    LG
Sbjct:  477 HATATACEYDAGPIAFRYPRGNGIGLDLP--EKGEVLEIGKGRIVREARRAPNARGGVAILSLGPRMHESLRAADQLAAQGVPVTVADARFAKPIDKALVEDLARQHEVFITIEEGAIGGFSSLVVQHLAETGLLD-KVKFRPMALPDRYIDHNTQDAQYEDAGLTAPHIVRTAADALG 652          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.247e-37
Identity = 79/170 (46.47%), Postives = 113/170 (66.47%), Query Frame = -1
Query:  256 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 765
            MV TAA  D  P   R+PRG G+G  +P + +  PL IGKGRI+ EG  VA+L  G+ +Q C+ A  +L ++ ++ TVADARF KP D +L+  LA  HE+LI VEEG++GGF SHV  +L   G+LDG LKLR++ +PDR+ +H +P  Q  ++G+ ++ I+  VL  L
Sbjct:  463 MVVTAAGHDSGPIALRYPRGEGVGVEIPEDPQ--PLAIGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFCSHVATWLANQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.202e-34
Identity = 78/171 (45.61%), Postives = 108/171 (63.16%), Query Frame = -1
Query:  256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768
            HM  TAA  D  P  FR+PRGNG G  LP   +   LEIGKGR++ EG  VAIL  G+ + + + AA+ L+++ +S +V D RF KPLD +LIR+    HE+ +TVEEGS+GG G+HV    +  G++D  LKLR++ LPD + D   P  Q + +GL++  I  TVL  L
Sbjct:  460 HMTYTAAEHDAGPIAFRYPRGNGTGVALPAVPQ--KLEIGKGRVVREGKTVAILSLGTRLAEALKAADTLEARGLSTSVIDLRFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGAHVLTLASDEGLIDAGLKLRTLRLPDMFQDQDKPELQYDAAGLNAPQIVDTVLKAL 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.659e-31
Identity = 72/173 (41.62%), Postives = 106/173 (61.27%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            +MV + A  D  P   R+PRGNG+G  L    +  P  IGKGR++  G +VAIL  G+ +++ + AA+ L +Q +S +VAD RF KPLD  L RQL   H+++IT+EEG++GGF + V    +  G++D  LK+R++ LPDR+        Q  E+GL +  I A V+S L R
Sbjct:  460 NMVHSMAHYDQGPISVRYPRGNGVGVSLEGEKEILP--IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVISALHR 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.297e-30
Identity = 71/173 (41.04%), Postives = 105/173 (60.69%), Query Frame = -1
Query:  250 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 768
            +MV + A  D  P   R+PRGNG+G  L    +  P  IGKGR++  G +VAIL  G+ +++ + AA+ L +Q +S +VAD RF KPLD  L RQL   H+++IT+EEG++GGF + V    +  G++D  LK+R++ LPDR+        Q  E+GL +  I A V + L R
Sbjct:  460 NMVHSMAHYDQGPISVRYPRGNGVGVSLEGEKEILP--IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVTAALQR 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.170e-27
Identity = 77/173 (44.51%), Postives = 106/173 (61.27%), Query Frame = -1
Query:  253 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 768
            HM+ TA  ++ +P   R+PRG  +G  LP       LEIG+GR L +G+  AIL  G  V   + AA +L+ Q ISV+V DARF KPLD  L++++A  H +++ VEE +V GGFGS V   L+  G LD  LK+R M +PDRYI HG+  +   E GL +  I+ T+  LLG
Sbjct:  455 HMLHTAVALN-KPVALRYPRGTALG--LPPEPPHV-LEIGRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVAM-HGVVLVVEENAVQGGFGSAVLESLSNQGALDRGLKIRCMGIPDRYIPHGTQKELRGEIGLDAVGIATTLKELLG 622          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_VIBVY (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=dxs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.586e-27
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L +     TVAD RF KPLD  LIRQLANEH++LIT+EE ++ GG G+ V  F+    I+   L L    LPD++I  G+  +  EE GL ++ I   +   L +
Sbjct:  470 PSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEALNA-----TVADMRFVKPLDEALIRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLNLG---LPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_ERYLH2.514e-3846.781-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_XANP24.287e-3851.401-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS_SPHWW9.551e-3846.631-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_GLUOX9.551e-3849.161-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]
DXS2_RHORT1.247e-3746.471-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_SPHAL2.202e-3445.611-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS1_ZYMMO8.659e-3141.621-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS2_ZYMMO4.297e-3041.041-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]
DXS_MAGSM1.170e-2744.511-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_VIBVY7.586e-2743.211-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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