CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1147..1914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.294e-26
Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L +     TVAD RF KPLD  L+RQLANEH++LIT+EE ++ GG G+ V  F+    I+   L L    LPD++I  G+  +  EE GL ++ I   +   L +
Sbjct:  470 PSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEALNA-----TVADMRFVKPLDEALLRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLNLG---LPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 71/171 (41.52%), Postives = 98/171 (57.31%), Query Frame = -1
Query:  259 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 765
            M+ T     D P   R+PRGNGIG  +P   +G  PL IGKG IL  GD + ILGYG++V   + AA  L+   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V    +   +L   + L+   +PDR +DH +P     + GL+S  I+  +L +
Sbjct:  460 MIVTGVNYTDGPIAMRYPRGNGIG--VPLMEEGWEPLPIGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGSAVAEAFSDHNVL---VPLKRFGVPDRLVDHATPDQSKADLGLTSPQIAEQILQV 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.882e-26
Identity = 73/169 (43.20%), Postives = 100/169 (59.17%), Query Frame = -1
Query:  265 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 765
            MV T       P   RFPRGNG G  +P   +G  PLEIGKG IL  GD V I+GYG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   ++T+EEG V GGFGS V   L  + ++   + ++ + +PD  ++H +P +   E GL+SR I+  VL
Sbjct:  460 MVVTGIEYTTGPIAMRFPRGNGYG--VPLMEEGWEPLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEALLDADVV---VPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERVL 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.917e-26
Identity = 73/169 (43.20%), Postives = 100/169 (59.17%), Query Frame = -1
Query:  265 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 765
            MV T       P   RFPRGNG G  +P   +G  PLEIGKG IL  GD V I+GYG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   ++T+EEG V GGFGS V   L  + ++   + ++ + +PD  ++H +P +   E GL+SR I+  VL
Sbjct:  460 MVVTGIEHTTGPIAMRFPRGNGYG--VPLMEEGWEPLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEALLDADVV---VPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERVL 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 70/149 (46.98%), Postives = 95/149 (63.76%), Query Frame = -1
Query:  295 DRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 738
            D P   R+PRG+G GA LP  +   PL IGKG     G R+A+L +G++V   +  A  L      +TVAD RF +PLD  LIR+LA+ H++L+TVEE +V GG GS V  +L  +G LD P  +R + LPDR++DHG+PA+ L E GL
Sbjct:  468 DGPFAVRYPRGSGPGAALPEADLD-PLAIGKGVCRRRGRRIAVLAFGTLVVPALAVAEAL-----DLTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAG-LDVP--VRHLGLPDRFVDHGTPAELLAEVGL 607          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.095e-25
Identity = 70/168 (41.67%), Postives = 98/168 (58.33%), Query Frame = -1
Query:  268 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 765
            MV T       P   R+PRG+G+G  +P   +G  PL IGK  +L  G  V IL YGS+V   + AA +LK   IS TV +ARF KPLDT+LI  LA +  +++TVEEG  +GGFGS V   L  +   D  + L  + +PD +++H +P + L E GL+S  I+  +
Sbjct:  465 MVVTGIQYTQGPIAMRYPRGSGVG--VPLAEEGWEPLPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEALLDA---DLAVPLLRLGVPDVWVEHATPEESLAELGLNSAGIAERI 627          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_THEEB (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxs PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25
Identity = 68/180 (37.78%), Postives = 101/180 (56.11%), Query Frame = -1
Query:  229 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 765
            M+ T     D P   R+PRGNG G  L       PLEIGKG +L  G+ + ++ YGS+V   +  A +LK   +S  V +ARF KPLDT+LI  LA +   ++T+EEG  +GGFGS V   L  + IL   L+L    +PD  ++H SP +   + GL+   ++ T++   G P+ A ++
Sbjct:  460 MIVTGINYTDGPIALRYPRGNGYGVALMEEG-WEPLEIGKGELLRSGEDLLLVAYGSMVYPAMQVAEILKEHGMSAAVINARFAKPLDTELILPLAKQIGRVVTLEEGCLMGGFGSAVLEALQEADILVPVLRLG---VPDILVEHASPDESKADLGLTPPQMAETIMQKFGVPQRATVV 635          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.440e-25
Identity = 70/181 (38.67%), Postives = 101/181 (55.80%), Query Frame = -1
Query:  229 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 765
            M+ T     D P   R+PRGNG+G  +P   +G   L IGKG IL  GD + +LGYG++V   +  A +L    I  TV +ARF KPLDTDLI  LA +   ++T+EEG  +GGFGS V   L    +L   + ++   +PD+ +DH  P +   + GL+S  I+  VL    + +E  +I
Sbjct:  459 MIVTGVNYTDGPIAMRYPRGNGLG--VPLMEEGWEALPIGKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVAEALLDHNVL---VPVKRFGVPDQLVDHAKPDESFADLGLTSSQIADEVLKSFFKTQEPSVI 634          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.436e-25
Identity = 65/162 (40.12%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            PS  R+PRG+G+G  +    + T LEIGKGR++ +G++VAIL +G+ +   + AA     ++++ TVAD RF KPLD  LIRQLA+EH++L+T+EE ++ GG G+ V  F+    I+   L L    LPD++I  G+  +  EE GL ++ I  ++   L +
Sbjct:  470 PSAVRYPRGSGMGTEI--EKEFTALEIGKGRVVRKGEKVAILSFGTFLPNALEAA-----KNLNATVADMRFVKPLDEALIRQLADEHDVLVTLEENAIAGGAGAGVIEFMMKEKIIKPVLNLG---LPDKFIHQGTQEELHEELGLDAKGIEKSIAEYLAK 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_GEOSW (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus sp. (strain WCH70) GN=dxs PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.436e-25
Identity = 69/177 (38.98%), Postives = 98/177 (55.37%), Query Frame = -1
Query:  241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768
            HMV TA   DD P   RFPRGNG+G  L    K  P  IG   +L EG  +AIL +G+ +   + AA  L   +ISV V +ARF KP+D  ++  L   +  ++T+EE  + GGFGS V  F    G       +  M +PDR+I+HGS  + L E GL++ HI   V +++ R ++
Sbjct:  456 HMVYTAIQYDDGPIALRFPRGNGLGVKLDEELKKIP--IGTWEVLREGRDLAILTFGTTISMALEAAEKLAKDNISVKVVNARFIKPMDEKILHDLLESNIPILTIEEAVLQGGFGSAVLEFAHDHGYHQA--VINRMGIPDRFIEHGSVKELLNEIGLTTAHIIDRVKTIIPRKQK 628          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_VIBVU1.294e-2642.591-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_CYAP81.690e-2641.521-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_ANAVT2.882e-2643.201-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ANASP4.917e-2643.201-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ALHEH8.387e-2646.981-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]
DXS_SYNJB1.095e-2541.671-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_THEEB1.868e-2537.781-deoxy-D-xylulose-5-phosphate synthase OS=Thermos... [more]
DXS_CYAP72.440e-2538.671-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_VIBPA5.436e-2540.121-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_GEOSW5.436e-2538.981-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
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