CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1147..1914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_LYSSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=dxs PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.273e-25
Identity = 65/177 (36.72%), Postives = 103/177 (58.19%), Query Frame = -1
Query:  241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768
            HMV TA   D  P   R+PRGNGIG  +P +++   L IG   +L EG   +IL +G+ +   + AA+ML  Q I + V +ARF KP+D D++ ++ + H+ ++T+EE  + GGFGS V  F    G L+  +    M +PD+YI+HG+    LEE  +++    A +  LL + ++
Sbjct:  456 HMVKTAIEYDGGPIALRYPRGNGIG--VPLDDELVALPIGSWEVLREGKDASILTFGTTIPMAMQAADMLAQQGIDIEVVNARFIKPMDKDMLHRILSNHKPILTIEEAVLKGGFGSGVLEFAHDHGYLNAIVD--RMGIPDQYIEHGNVDQLLEEIHMTAEDAVARMQVLLQQKQQ 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_GEOKA (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus kaustophilus GN=dxs PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.273e-25
Identity = 69/177 (38.98%), Postives = 99/177 (55.93%), Query Frame = -1
Query:  241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768
            HMV TA   DD P   RFPRGNG+G  L    K  P  IG   +L +G   AIL +G+ +   + AA+ L    ISV V +ARF KP+D  ++ +L      ++TVEE  + GGFGS V  F    G     ++   M +PDR+I+HGS ++ L E GL+S HI   + +++ R ++
Sbjct:  454 HMVYTAIRYDDGPIAMRFPRGNGLGVPLDEELKEIP--IGTWEVLRDGCDAAILTFGTTISMALKAADELAKDGISVKVVNARFLKPMDVAMLHELLESRLPILTVEEAVLQGGFGSAVLEFAHDHGYHGAVIE--RMGIPDRFIEHGSVSELLNEIGLTSTHIIDRIKTMVPRKQK 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 73/180 (40.56%), Postives = 102/180 (56.67%), Query Frame = -1
Query:  250 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLK--LRSMVLPDRYIDHGSPADQLEESGLSS----RHISATVLSLLGR 765
            MV T       P   R+PRG G+G  +P   +G  P+ IGK  +L  G  V IL YGS+V   + AA +LK   IS TV +ARF KPLDT+LI  LA +  +++TVEEG  +GGFGS V        +LD  ++  L  + +PD +++H +P + L E GL+S      I A V +L G+
Sbjct:  465 MVVTGIQYTKGPIAMRYPRGAGVG--VPLAEEGWEPIPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVG-----EALLDADIRVPLLRLGVPDVWVEHATPEESLAELGLNSVGIAERIRAKVEALQGQ 637          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_GEOTN (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 64/177 (36.16%), Postives = 99/177 (55.93%), Query Frame = -1
Query:  241 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 768
            HMV TA   DD P   RFPRGNG+G  L    K  P  IG   +L +G    IL +G+ +   + AA  L    +SV V +ARF KP+D  ++ +L      ++T+EE  + GGFGS V  F    G     ++   M +PDR+I+HGS ++ L+E GL++ H++  + +++ R ++
Sbjct:  456 HMVYTALRYDDGPIAMRFPRGNGLGVPLDEELKEIP--IGTWEVLRDGSDAVILTFGTTISMALEAAEQLARDGVSVKVVNARFLKPMDEAMLHELLESRLPILTIEEAVLQGGFGSSVLEFAHDHGYHQAVIE--RMGIPDRFIEHGSVSELLDEIGLTAAHVADRIKTIMPRKQK 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = -1
Query:  259 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 765
            MV T     D P   R+PRG+G+G  +P   +G  P+ IGKG IL  GD V ++GYG++V Q +  A +LK   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L    ++   + ++   +PD+ +DH  P +   + GL+S  I+  +  L
Sbjct:  460 MVVTGINHTDGPIAMRYPRGSGVG--VPLMEEGWEPVSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVAEALLDHDVV---VPIKRFGVPDKLVDHAKPDESKADLGLTSPQIAEEIRQL 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CUPTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dxs PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 74/174 (42.53%), Postives = 102/174 (58.62%), Query Frame = -1
Query:  253 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 756
            T A   D P+  R+PRG+G GA +  +    P+ +GKG +  E     G RV  L +GS+VQ  + AA  L +     TVAD RF KPLD  L+++LA +H+ L+TVEEGSV GG GS V   L  +GI D P  + ++ LPDR++DHG PA  L++ GL +  I  +V    G
Sbjct:  462 TTAFQQDCPTAVRYPRGSGPGAAIAADL--APVPVGKGVVRREAGARAGHRVGFLAFGSMVQPALGAAEALDA-----TVADMRFVKPLDVALVKRLAADHDYLVTVEEGSVMGGAGSAVLEALAEAGI-DKP--VLTLGLPDRFVDHGDPAFLLQQCGLDAAGIERSVRERFG 625          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.066e-24
Identity = 72/180 (40.00%), Postives = 102/180 (56.67%), Query Frame = -1
Query:  232 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALL 768
            HM+ TA +   RP   R+PRG G G  LP +     LEIG+G +L EGD VAI+  GS V     AA +L+++ I  TV +ARF KPLD +LI   A     ++TVEE ++ GGFGS V   L   G+ D  ++ + + +PDR+I+ G      ++ GL    I+ATV + L    +A L
Sbjct:  457 HMLKTA-IYAGRPVALRYPRGAGYG--LPLDQTIQSLEIGRGELLTEGDDVAIVAIGSTVYPAQEAAKLLEARGIRATVVNARFVKPLDRELILGAARRTGCIVTVEENALQGGFGSAVLELLADEGMTD--VRAKRIGIPDRFIEQGPQPQLRKDLGLDGAGIAATVEAFLTAKGQAAL 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.698e-24
Identity = 69/177 (38.98%), Postives = 99/177 (55.93%), Query Frame = -1
Query:  241 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 765
            MV T       P   R+PRGNG+G  +P   +G   L IGKG IL  GD + +LGYG++V   +  A +L    I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L  + IL   + ++   +PD+ +DH +P +   + GL+S  I+  VL+     K+
Sbjct:  460 MVVTGINHTSGPIAMRYPRGNGLG--VPLMEEGWEALPIGKGEILRSGDDILLLGYGTMVNTSLQVAEILSEHGIEATVVNARFVKPLDTELIFPLAQRLGKVVTLEEGCLMGGFGSAVLEALQDANIL---VPVKRFGVPDKLVDHATPEESFADLGLTSPQIAQQVLAAFFSQKQ 631          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_VIBHB (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dxs PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.010e-24
Identity = 65/162 (40.12%), Postives = 101/162 (62.35%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            PS  R+PRG+G+G  +  +   T LEIGKGRI+ +G++VAIL +G+ +   + AA     ++++ TVAD RF KPLD  LIRQLA EH++L+T+EE ++ GG G+ V  F+    I+   L L    LPDR++  G+  +  E+ GL ++ I  ++   L +
Sbjct:  470 PSAVRYPRGSGMGTDIEKDF--TALEIGKGRIVRKGEKVAILSFGTFLGNALEAA-----ENLNATVADMRFVKPLDEALIRQLAAEHDVLVTLEENAIAGGAGAGVIEFMMQDKIIKPVLNLG---LPDRFVPQGTQDELHEDLGLDAKGIEKSINDYLAK 621          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 68/172 (39.53%), Postives = 97/172 (56.40%), Query Frame = -1
Query:  256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768
            HM+ATA   ++ P   R+PRG+G+G  +P   +   L IG+  +L EG  VAI+  G+ V     AA++L  + I  TV +ARF KPLD  LI   A E   L+TVEE  + GGFGS V   L  +G+L   L+L    L DR+ DH S A    ++G+ +  I++  L+ L
Sbjct:  449 HMLATALAYEEGPIALRYPRGSGVG--VPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAGLLIPVLRLG---LADRFFDHASQASLRRQAGIDAESIASRTLAFL 615          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_LYSSC9.273e-2536.721-deoxy-D-xylulose-5-phosphate synthase OS=Lysinib... [more]
DXS_GEOKA9.273e-2538.981-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_SYNJA1.211e-2440.561-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_GEOTN1.211e-2436.161-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_CYAA51.211e-2439.181-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_CUPTR1.211e-2442.531-deoxy-D-xylulose-5-phosphate synthase OS=Cupriav... [more]
DXS2_GEOMG2.066e-2440.001-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_MICAN2.698e-2438.981-deoxy-D-xylulose-5-phosphate synthase OS=Microcy... [more]
DXS_VIBHB6.010e-2440.121-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_THERP1.025e-2339.531-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
back to top