CX043881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYMTH (1-deoxy-D-xylulose-5-phosphate synthase OS=Symbiobacterium thermophilum GN=dxs PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23 Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = -1 Query: 235 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 768 HM+ TA + D P+ R+PRG G +P + PL IG+G ++ EG VA++G G++ + C AA +L + IS V + RF KPLD +L+ + E ++TVEE + GGFGS V G+ ++ M +PD ++DHG PA LE GL+ ++ +LL R + L Sbjct: 451 HMLYTA-LCHDGPAALRYPRGKAQG--VPLDETLQPLPIGRGEVMQEGADVALIGLGTMARVCQEAARLLAEKSISAMVINPRFVKPLDAELLLRAGREVGAVVTVEEACLAGGFGSAVLELYAAHGV---NARVERMGIPDEFVDHGQPARYLERYGLTPEGVAQRAEALLLRMRSDL 623
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NOSP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxs PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23 Identity = 71/169 (42.01%), Postives = 95/169 (56.21%), Query Frame = -1 Query: 265 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 765 MV T P R+PRGNG G +P +G PLEIGK IL GD V I+ YG++V + AA +L I TV +ARF KPLDT+LI LA + +IT+EEG + GGFGS + L + IL + ++ +PD +DH P + E GL+S I+ VL Sbjct: 460 MVVTGVNHTSGPIAMRYPRGNGHG--VPLMEEGWEPLEIGKSEILRTGDDVLIVAYGTMVYPGMQAAEILSEHGIEATVINARFVKPLDTELILPLAKKIGRVITLEEGCIMGGFGSAIAEALMDADIL---VPVKRFGVPDVLVDHAEPNESKTELGLTSHQIAERVL 623
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BREBN (1-deoxy-D-xylulose-5-phosphate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxs PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23 Identity = 67/172 (38.95%), Postives = 100/172 (58.14%), Query Frame = -1 Query: 256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768 HM+ TA P +R+PR G + + P IGK I+ EG VAIL +G V + A N L+ + I + +ARFCKPLD +L+ +LA E +ITVEEGS +GGFGS V + +G + ++ + +PD +++HGS +Q +E GL++ HI+A V SL+ Sbjct: 452 HMMKTAVEYKGGPISYRYPRLPTRGVKMDEELQVLP--IGKAEIVREGKHVAILSFGHVFEIAEAAVNQLQEEGIKPMLVNARFCKPLDEELLFRLAKEGYDIITVEEGSEMGGFGSAVIECYSRAGY--HGMNVQIVAVPDYFVEHGSVKEQRQEVGLTADHIAARVRSLM 619
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus subtilis GN=dxs PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23 Identity = 66/176 (37.50%), Postives = 98/176 (55.68%), Query Frame = -1 Query: 244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768 HMV TA D+ P RFPRGNG+G + K P IG +L G+ IL +G+ ++ + AA L+ + +SV V +ARF KP+D +++ + E ++T+EE + GGFGS + F G P+ M +PDR+I+HGS LEE GL+ + + A + LL PK Sbjct: 456 HMVHTALSYDEGPIAMRFPRGNGLGVKMDEQLKTIP--IGTWEVLRPGNDAVILTFGTTIEMAIEAAEELQKEGLSVRVVNARFIKPIDEKMMKSILKEGLPILTIEEAVLEGGFGSSILEFAHDQGEYHTPID--RMGIPDRFIEHGSVTALLEEIGLTKQQV-ANRIRLLMPPK 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23 Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = -1 Query: 256 RFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 720 R+PRGNGIG +P +G PLEIGK IL GD V +LGYGS+V + A +L I TV +ARF KPLDT+LI LA ++T+EEG +GGFGS V L + +L + L+ + +PD +DH +P + GL+ ++ +++ L Sbjct: 475 RYPRGNGIG--VPLMEEGWEPLEIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNNVL---VPLKRLGVPDILVDHATPEQSTVDLGLTPAQMAQNIMASL 626
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALME (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dxs PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23 Identity = 74/179 (41.34%), Postives = 98/179 (54.75%), Query Frame = -1 Query: 247 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEG-----DRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGRP 756 T A D P+ R+PRG G+G T L +GKG I EG RVAI+ +GS+V + AA L + TVA+ RF KPLD +L++QLA H+ L+TVEEG ++GG GS V L +GI L + LPD++IDHG PA L GL + I +V SL +P Sbjct: 462 TTAFQQDCPTAVRYPRGAGVGVATQPEL--TALPVGKGEIRREGHARAGQRVAIMAFGSMVHPALTAAEQLDA-----TVANMRFVKPLDVELVKQLAANHDFLVTVEEGATMGGAGSAVLEALAEAGI---ELPTLVLGLPDKFIDHGDPAHLLSLCGLDAAGIERSVRERFSLTAQP 630
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23 Identity = 68/162 (41.98%), Postives = 95/162 (58.64%), Query Frame = -1 Query: 250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732 P+ R+PRG G A P + PLEIGKG + +G++VA+L +G VQ LA M ++ I+ TV D RF KPLD L+ +LA HE+L+T+EE ++ GG G+ V FL +L L L LPD Y++H PA L E GL + I A+V + + R Sbjct: 477 PAAVRYPRGTGPNA--PISGDLQPLEIGKGVVRRQGEKVALLVFG--VQ---LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAR 628
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23 Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = -1 Query: 262 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 732 P+ R PRG+G+G + + PL+IG+G IL EGD V I+ YGS+VQ AN+LK++ IS + +ARF +PLD DLI L + + ++T+EEG+ VGGFGS + L + I L++ +PD +DH SP E+ GL+ ++ +++ Sbjct: 470 PTALRIPRGSGLGVAV-MDEGWEPLKIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDNDINIPVLRIG---IPDVLVDHASPDQSKEKLGLTPDQMAEKIIN 623
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23 Identity = 68/174 (39.08%), Postives = 97/174 (55.75%), Query Frame = -1 Query: 247 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 765 M+ T D P R+PRGNG G L PL IGK +L +GD + +L YGS+V + AA +L+ I+ TV +ARF KPLDT+LI LA + ++TVEEG +GGFGS V L IL + + + +PD ++H +P + GL+S I+ VL+ +P Sbjct: 458 MLVTGINYMDGPIGLRYPRGNGYGVALMEEG-WEPLPIGKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQEIL---VPVTRIGIPDILVEHATPDQSKAQLGLTSAQIAERVLAKTQQP 627
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEAE (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23 Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = -1 Query: 250 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 756 T + D P+ R+PRG+G P + P+EIGKG + G RVA+L +G VQ LA M ++ + TV D RF KPLD L+R+LA HE+L+T+EE +V GG GS V FL G+ + L + LPD Y++H P++ L E GL + I V L R Sbjct: 467 TTGYLFDGPAAVRYPRGSGPNH--PIDPDLQPVEIGKGVVRRRGGRVALLVFG--VQ---LAEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626 The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bpback to top |