CX043881

Overview
NameCX043881
Unique NameCX043881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYMTH (1-deoxy-D-xylulose-5-phosphate synthase OS=Symbiobacterium thermophilum GN=dxs PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = -1
Query:  235 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 768
            HM+ TA +  D P+  R+PRG   G  +P +    PL IG+G ++ EG  VA++G G++ + C  AA +L  + IS  V + RF KPLD +L+ +   E   ++TVEE  + GGFGS V       G+     ++  M +PD ++DHG PA  LE  GL+   ++    +LL R +  L
Sbjct:  451 HMLYTA-LCHDGPAALRYPRGKAQG--VPLDETLQPLPIGRGEVMQEGADVALIGLGTMARVCQEAARLLAEKSISAMVINPRFVKPLDAELLLRAGREVGAVVTVEEACLAGGFGSAVLELYAAHGV---NARVERMGIPDEFVDHGQPARYLERYGLTPEGVAQRAEALLLRMRSDL 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_NOSP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxs PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 71/169 (42.01%), Postives = 95/169 (56.21%), Query Frame = -1
Query:  265 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 765
            MV T       P   R+PRGNG G  +P   +G  PLEIGK  IL  GD V I+ YG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   +IT+EEG + GGFGS +   L  + IL   + ++   +PD  +DH  P +   E GL+S  I+  VL
Sbjct:  460 MVVTGVNHTSGPIAMRYPRGNGHG--VPLMEEGWEPLEIGKSEILRTGDDVLIVAYGTMVYPGMQAAEILSEHGIEATVINARFVKPLDTELILPLAKKIGRVITLEEGCIMGGFGSAIAEALMDADIL---VPVKRFGVPDVLVDHAEPNESKTELGLTSHQIAERVL 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BREBN (1-deoxy-D-xylulose-5-phosphate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxs PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 67/172 (38.95%), Postives = 100/172 (58.14%), Query Frame = -1
Query:  256 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 768
            HM+ TA      P  +R+PR    G  +    +  P  IGK  I+ EG  VAIL +G V +    A N L+ + I   + +ARFCKPLD +L+ +LA E   +ITVEEGS +GGFGS V    + +G     + ++ + +PD +++HGS  +Q +E GL++ HI+A V SL+
Sbjct:  452 HMMKTAVEYKGGPISYRYPRLPTRGVKMDEELQVLP--IGKAEIVREGKHVAILSFGHVFEIAEAAVNQLQEEGIKPMLVNARFCKPLDEELLFRLAKEGYDIITVEEGSEMGGFGSAVIECYSRAGY--HGMNVQIVAVPDYFVEHGSVKEQRQEVGLTADHIAARVRSLM 619          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_BACSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus subtilis GN=dxs PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 66/176 (37.50%), Postives = 98/176 (55.68%), Query Frame = -1
Query:  244 HMVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 768
            HMV TA   D+ P   RFPRGNG+G  +    K  P  IG   +L  G+   IL +G+ ++  + AA  L+ + +SV V +ARF KP+D  +++ +  E   ++T+EE  + GGFGS +  F    G    P+    M +PDR+I+HGS    LEE GL+ + + A  + LL  PK
Sbjct:  456 HMVHTALSYDEGPIAMRFPRGNGLGVKMDEQLKTIP--IGTWEVLRPGNDAVILTFGTTIEMAIEAAEELQKEGLSVRVVNARFIKPIDEKMMKSILKEGLPILTIEEAVLEGGFGSSILEFAHDQGEYHTPID--RMGIPDRFIEHGSVTALLEEIGLTKQQV-ANRIRLLMPPK 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = -1
Query:  256 RFPRGNGIGAVLPXNNKG-TPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 720
            R+PRGNGIG  +P   +G  PLEIGK  IL  GD V +LGYGS+V   +  A +L    I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L  + +L   + L+ + +PD  +DH +P     + GL+   ++  +++ L
Sbjct:  475 RYPRGNGIG--VPLMEEGWEPLEIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNNVL---VPLKRLGVPDILVDHATPEQSTVDLGLTPAQMAQNIMASL 626          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_RALME (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23
Identity = 74/179 (41.34%), Postives = 98/179 (54.75%), Query Frame = -1
Query:  247 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEG-----DRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGRP 756
            T A   D P+  R+PRG G+G         T L +GKG I  EG      RVAI+ +GS+V   + AA  L +     TVA+ RF KPLD +L++QLA  H+ L+TVEEG ++GG GS V   L  +GI    L    + LPD++IDHG PA  L   GL +  I  +V    SL  +P
Sbjct:  462 TTAFQQDCPTAVRYPRGAGVGVATQPEL--TALPVGKGEIRREGHARAGQRVAIMAFGSMVHPALTAAEQLDA-----TVANMRFVKPLDVELVKQLAANHDFLVTVEEGATMGGAGSAVLEALAEAGI---ELPTLVLGLPDKFIDHGDPAHLLSLCGLDAAGIERSVRERFSLTAQP 630          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23
Identity = 68/162 (41.98%), Postives = 95/162 (58.64%), Query Frame = -1
Query:  250 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 732
            P+  R+PRG G  A  P +    PLEIGKG +  +G++VA+L +G  VQ   LA  M  ++ I+ TV D RF KPLD  L+ +LA  HE+L+T+EE ++ GG G+ V  FL    +L   L L    LPD Y++H  PA  L E GL +  I A+V + + R
Sbjct:  477 PAAVRYPRGTGPNA--PISGDLQPLEIGKGVVRRQGEKVALLVFG--VQ---LAEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLHLG---LPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAR 628          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23
Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = -1
Query:  262 PSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 732
            P+  R PRG+G+G  +  +    PL+IG+G IL EGD V I+ YGS+VQ     AN+LK++ IS  + +ARF +PLD DLI  L  + + ++T+EEG+ VGGFGS +   L  + I    L++    +PD  +DH SP    E+ GL+   ++  +++
Sbjct:  470 PTALRIPRGSGLGVAV-MDEGWEPLKIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDNDINIPVLRIG---IPDVLVDHASPDQSKEKLGLTPDQMAEKIIN 623          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23
Identity = 68/174 (39.08%), Postives = 97/174 (55.75%), Query Frame = -1
Query:  247 MVATAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRP 765
            M+ T     D P   R+PRGNG G  L       PL IGK  +L +GD + +L YGS+V   + AA +L+   I+ TV +ARF KPLDT+LI  LA +   ++TVEEG  +GGFGS V   L    IL   + +  + +PD  ++H +P     + GL+S  I+  VL+   +P
Sbjct:  458 MLVTGINYMDGPIGLRYPRGNGYGVALMEEG-WEPLPIGKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQEIL---VPVTRIGIPDILVEHATPDQSKAQLGLTSAQIAERVLAKTQQP 627          
BLAST of CX043881 vs. ExPASy Swiss-Prot
Match: DXS_PSEAE (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23
Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = -1
Query:  250 TAAVIDDRPSCFRFPRGNGIGAVLPXNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 756
            T   + D P+  R+PRG+G     P +    P+EIGKG +   G RVA+L +G  VQ   LA  M  ++ +  TV D RF KPLD  L+R+LA  HE+L+T+EE +V GG GS V  FL   G+    + L  + LPD Y++H  P++ L E GL +  I   V   L R
Sbjct:  467 TTGYLFDGPAAVRYPRGSGPNH--PIDPDLQPVEIGKGVVRRRGGRVALLVFG--VQ---LAEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
The following BLAST results are available for this feature:
BLAST of CX043881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
DXS_SYMTH1.025e-2336.311-deoxy-D-xylulose-5-phosphate synthase OS=Symbiob... [more]
DXS_NOSP71.025e-2342.011-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc ... [more]
DXS_BREBN1.025e-2338.951-deoxy-D-xylulose-5-phosphate synthase OS=Breviba... [more]
DXS_BACSU1.025e-2337.501-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_SYNY31.339e-2341.401-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_RALME1.749e-2341.341-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_PSEPK1.749e-2341.981-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PROMP1.749e-2339.241-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_CYAP41.749e-2339.081-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_PSEAE2.284e-2340.591-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14A06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A06-B12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043881 ID=CX043881; Name=CX043881; organism=Citrus sinensis; type=EST; length=768bp
TGAAGATCAATGCCTTGTATCTTTATTACAAGAAAAAATTGTGAATGTAC
AGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACGGTAATGCT
TCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTGGACCTTAT
AGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGAAGGGCAAG
ATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTTCTTTTGGC
CTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAGGAGAGCCC
TGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTATCTATCAG
GAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGCCACTTAAG
GTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAACCCTCTTC
CACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAATGAGGTCTG
TATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGGAAATGTCT
TGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACTACAGAACC
ATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCTTCCCTTCC
CAATCTCAAGTGGAGTTCCTTTGTTATTANGTGGGAGAACTGCTCCAATT
CCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCTATAACTGC
TGCTGTAGCGACCATGTG
back to top