CX043861

Overview
NameCX043861
Unique NameCX043861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.259e-50
Identity = 97/110 (88.18%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNSTSV EVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.259e-50
Identity = 97/110 (88.18%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNSTSV EVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.259e-50
Identity = 97/110 (88.18%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNSTSV EVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.257e-50
Identity = 96/110 (87.27%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.261e-50
Identity = 97/110 (88.18%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP VVPGGDLAKVQRAVCMISNSTSV EVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.261e-50
Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.261e-50
Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.261e-50
Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.261e-50
Identity = 95/110 (86.36%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.261e-50
Identity = 97/110 (88.18%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP VVPGGDLAKVQRAVCMISNSTSV EVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX043861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA2_MAIZE3.259e-5088.18Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA1_MAIZE3.259e-5088.18Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA1_ELEIN3.259e-5088.18Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA_OXYGR4.257e-5087.27Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA_WHEAT7.261e-5088.18Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]
TBA6_MAIZE7.261e-5086.36Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE7.261e-5086.36Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ELEIN7.261e-5086.36Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA3_ARATH7.261e-5086.36Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA2_HORVU7.261e-5088.18Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13H05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13H05-P9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043861 ID=CX043861; Name=CX043861; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGTAAATTGAAATAAGATAATCCAATCAAAATCA
AACAGTCAAAGATTACATGAACATATAGAACCCAGAAACTTGATAAGCAT
AACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGGTTT
TCATCACAAAATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATAT
TAAAACGCACAGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCAT
AATCTTCCTCACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTC
TCAAGGGCAGCAAGATCCTCACGAGCCTCAAAAAACTCTCCTTCTTCCAT
ACCCTCGCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAAAT
CAAACTTGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTG
GAGATCATGCAAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAAC
AACAGTTGGTGGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACC
AGTCGACGAATTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCA
TTGACATCCTTGGGCACAAC
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