CX043861

Overview
NameCX043861
Unique NameCX043861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.273e-27
Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = -1
Query:  291 VPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG----GDLAKVQRAVCMISNSTSVAEVFSRID-HKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 617
            VP+D NAA+A +K K +   V+WCPTGFK GINYQ P  VP     G LA V R+V M+SN+T++ E +S+    KFD M AKRAFVHWYV          EAREDLAALEKDY
Sbjct:  324 VPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 437          
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.969e-27
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VV K+V  AV  +K+K  IQFVDW P  FK G+N Q PTV+P  + A+V+R+  MISN+T++++VF R++ KFD +YAKRA+VH +V          EAREDLAALEKDY
Sbjct:  321 VVNKEVTDAVKNVKSKANIQFVDWSPCAFKIGVNSQKPTVLPDSEFAQVERSCAMISNNTAISQVFERMNDKFDLLYAKRAYVHHFVSEGMEEGEFAEAREDLAALEKDY 430          
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = -1
Query:  360 VVPKDVNAAVATIKTKR--TIQFVDWCPTGFKCGINYQPPTVVPG--GD-LAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYV 620
            +VPK+   AV  I+ ++  T+ FVDW PTGFKCGIN   PT V G  GD +A+ +++VCM+SN+T++++VFSRI+HKFD MY KRAFVHWYV
Sbjct:  232 IVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYV 323          
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 53/110 (48.18%), Postives = 69/110 (62.73%), Query Frame = -1
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            V  ++VN AV+ IK + T+ FV WCP  FKCGIN QP T VPG   A   R+ CMI+N T++ +VF +++  FD M+ KRAFVH YV          +AR+DL  LE DY
Sbjct:  329 VSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELEVDY 438          
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = -1
Query:  369 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVH 620
            V PKD N A A +K KRT QFV+WCPTGFK GIN + PTV+ G  +A+V RAVC +SN+T+++E + R+++KFD M++KRAFVH
Sbjct:  297 VNPKDANTATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380          
The following BLAST results are available for this feature:
BLAST of CX043861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_GLOLA2.273e-2756.14Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA6_NAEGR2.969e-2753.64Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA_DICPU6.190e-2557.61Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA1_ENTHI6.190e-2548.18Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA_ENCHE3.072e-2458.33Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13H05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13H05-P9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043861 ID=CX043861; Name=CX043861; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGTAAATTGAAATAAGATAATCCAATCAAAATCA
AACAGTCAAAGATTACATGAACATATAGAACCCAGAAACTTGATAAGCAT
AACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGGTTT
TCATCACAAAATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATAT
TAAAACGCACAGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCAT
AATCTTCCTCACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTC
TCAAGGGCAGCAAGATCCTCACGAGCCTCAAAAAACTCTCCTTCTTCCAT
ACCCTCGCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAAAT
CAAACTTGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTG
GAGATCATGCAAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAAC
AACAGTTGGTGGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACC
AGTCGACGAATTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCA
TTGACATCCTTGGGCACAAC
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