CX043861

Overview
NameCX043861
Unique NameCX043861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.051e-48
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+DHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.051e-48
Identity = 95/110 (86.36%), Postives = 96/110 (87.27%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAV TIKTKRTIQFVDWCPTGFKCGINYQ PTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID KFD MY+KRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDTKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.051e-48
Identity = 93/110 (84.55%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAV +IKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRID KFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVHSIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 3.984e-48
Identity = 93/110 (84.55%), Postives = 95/110 (86.36%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP GD AKV RAVCMISNST++AEVFSRIDHKFD MYAKRAFVHWYV          E REDLAALEKDY
Sbjct:  318 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDPAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEVREDLAALEKDY 427
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.204e-48
Identity = 91/110 (82.73%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG DLAKVQRAVCMISNST++ E+FSR+DHKFD MYAKRAFVHWYV          EAREDLAALEKD+
Sbjct:  323 VVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGVDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.204e-48
Identity = 92/110 (83.64%), Postives = 96/110 (87.27%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVN AVA IK KRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFD MY+KRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.977e-47
Identity = 94/110 (85.45%), Postives = 95/110 (86.36%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQ PTVVPG DLAKVQRAVCMISNSTSV EVFSRI+ KFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGADLAKVQRAVCMISNSTSVVEVFSRINSKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.977e-47
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPT VPGGDLA+VQRAVCM++N+T++AE  SRIDHKFD MYAKRAFVHWYV          EAREDL ALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTAVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLVALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.583e-47
Identity = 91/110 (82.73%), Postives = 96/110 (87.27%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQP TVVPGGDLAKV RAVCMISNST++AEVFSR+DHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPSTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.583e-47
Identity = 91/110 (82.73%), Postives = 96/110 (87.27%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDV AAVA IKTKRTIQFVDWCPTGFKCGINYQ P+VVPGGDLAKVQRA+CMISN+T++AEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVTAAVAVIKTKRTIQFVDWCPTGFKCGINYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX043861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_TETTH3.051e-4883.64Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_DAUCA3.051e-4886.36Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S... [more]
TBA2_ELEIN3.051e-4884.55Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA1_STYLE3.984e-4884.55Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA2_CHLRE5.204e-4882.73Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA1_ARATH5.204e-4883.64Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA3_MAIZE1.977e-4785.45Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA1_PELFA1.977e-4780.91Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA_TETPY2.583e-4782.73Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBAN_PHYPO2.583e-4782.73Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13H05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13H05-P9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043861 ID=CX043861; Name=CX043861; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGTAAATTGAAATAAGATAATCCAATCAAAATCA
AACAGTCAAAGATTACATGAACATATAGAACCCAGAAACTTGATAAGCAT
AACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGGTTT
TCATCACAAAATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATAT
TAAAACGCACAGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCAT
AATCTTCCTCACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTC
TCAAGGGCAGCAAGATCCTCACGAGCCTCAAAAAACTCTCCTTCTTCCAT
ACCCTCGCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAAAT
CAAACTTGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTG
GAGATCATGCAAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAAC
AACAGTTGGTGGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACC
AGTCGACGAATTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCA
TTGACATCCTTGGGCACAAC
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