CX043861

Overview
NameCX043861
Unique NameCX043861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.753e-47
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFD MYAKRAFVHWYV          EARED+AALEKDY
Sbjct:  323 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.753e-47
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFD MYAKRAFVHWYV          EARED+AALEKDY
Sbjct:  323 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.514e-47
Identity = 89/110 (80.91%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T+VAE ++R+DHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.814e-47
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.282e-46
Identity = 91/110 (82.73%), Postives = 95/110 (86.36%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAV TIKTKRT+QFVD CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLA LEK Y
Sbjct:  323 VVPKDVNAAVVTIKTKRTVQFVDXCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAXLEKXY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.282e-46
Identity = 88/110 (80.00%), Postives = 96/110 (87.27%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  198 VVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.282e-46
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE ++R+DHKFD MYAKRAFVHWYV          EARED+AALEKDY
Sbjct:  323 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.282e-46
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINY+PPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFD MYAKRAFVHWYV          EARED+AALEKDY
Sbjct:  323 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.674e-46
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFD MYAKRAFVHWYV          EARED+AALEKDY
Sbjct:  323 VVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.674e-46
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFD MYAKRAFVHWYV          EARED+AALEKDY
Sbjct:  323 VVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX043861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA1A_HUMAN5.753e-4780.00Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
TBA1A_CRIGR5.753e-4780.00Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU... [more]
TBA_ENTDO7.514e-4780.91Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA2_DROME9.814e-4780.00Tubulin alpha-2 chain OS=Drosophila melanogaster G... [more]
TBA_AVESA1.282e-4682.73Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA8_CHICK1.282e-4680.00Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA1C_RAT1.282e-4679.09Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tub... [more]
TBA1A_PIG1.282e-4679.09Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA_XENLA1.674e-4679.09Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBA_TORMA1.674e-4679.09Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13H05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13H05-P9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043861 ID=CX043861; Name=CX043861; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGTAAATTGAAATAAGATAATCCAATCAAAATCA
AACAGTCAAAGATTACATGAACATATAGAACCCAGAAACTTGATAAGCAT
AACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGGTTT
TCATCACAAAATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATAT
TAAAACGCACAGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCAT
AATCTTCCTCACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTC
TCAAGGGCAGCAAGATCCTCACGAGCCTCAAAAAACTCTCCTTCTTCCAT
ACCCTCGCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAAAT
CAAACTTGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTG
GAGATCATGCAAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAAC
AACAGTTGGTGGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACC
AGTCGACGAATTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCA
TTGACATCCTTGGGCACAAC
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