DC900404

Overview
NameDC900404
Unique NameDC900404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1138
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:572..1707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.354e-26
Identity = 74/187 (39.57%), Postives = 105/187 (56.15%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQ-PNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSSQ 554
            S PPS GSF R D    +  I+ F++   SP  +N YP+F+Y  +PR  +L + LF  PN    D   G  Y N+FDA  DAV++AL+  G   +EIVV+E+GWP  G       +  NA  Y  NLI H++   G+P  P K ++TY+FA++DE+ K  P  E+ FGLF P+    Y +    S +
Sbjct:  174 SFPPSQGSF-RNDVRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALFTAPNVVVQDGSLG--YRNLFDAMSDAVYAALSRAGGGSIEIVVSESGWPSAG---AFAATTNNAATYYKNLIQHVK--RGSPRRPNKVIETYLFAMFDENNK-NPELEKHFGLFSPNKQPKYPLSFGFSDR 351          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13J_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-O (Fragment) OS=Nicotiana tabacum GN=PR0 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.769e-26
Identity = 61/162 (37.65%), Postives = 95/162 (58.64%), Query Frame = 3
Query:   57 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            I+QFL  +  P   N YP+F +  +     L++ LF              Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G+      ++ENA+ Y  NLI H++  AGTP  PGK+++TY+FA++DE+ K G  +E+ FGLF PD  A Y +  +
Sbjct:    7 IIQFLARNNLPLLANVYPYFGHIYNTADVPLSYALFTQQEANPAG-----YQNLFDALLDSMYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLIDHVKRGAGTPKKPGKTIETYLFAMFDENDKKGEITEKHFGLFSPDQRAKYQLNFN 160          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 6.722e-26
Identity = 65/179 (36.31%), Postives = 101/179 (56.42%), Query Frame = 3
Query:   12 PPSSGSFIRQDT--MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            PPS GSF  +    +  I++FL  H SP  +N YP+FAY  + +   L + LF   +  V  G    Y N+FDA +D V++AL   G   +++V++ETGWP          +++NA+ +  NLI H++   GTP  PG+ ++TYIFA++DE+ K  P  E+ +GLF P     Y +  +
Sbjct:  179 PPSIGSFKSEYNALLYPIIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALFTAPSVVVQDGN-FGYRNLFDAMLDGVYAALEKAGGGSLKVVISETGWPSAAG---TATTIDNARTFISNLIQHVKE--GTPRRPGRPIETYIFAMFDENRKT-PELEKHWGLFSPTKQPKYQISFN 350          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 8.779e-26
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   15 PSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKS 548
            P   S  R++    +  I++FL  +  P   N YP+F +  +     L++ LF        + TG  Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G+      ++ENA+ Y  NL+ H++  AGTP  PG+ V+TY+FA++DE+ K G  +E+ FGLF P+ +A Y +    S
Sbjct:  177 PPKDSIFREEFKSFINPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFNQQG---TNSTG--YQNLFDALLDSIYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLVNHVKGGAGTPKKPGRIVETYLFAMFDENEKNGEVTEKHFGLFYPNRTAKYQLNFMYS 349          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 8.779e-26
Identity = 73/181 (40.33%), Postives = 103/181 (56.91%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLF-QPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVG 536
            S PPS GSF R D    +  I+ +L    +P  +N YP+F+Y  +PR  +L + LF  PN    D   G  Y N+FDA +D+VH+A++      VE+VV+E+GWP  G     G + +NA+ Y  NL+   R+  G+P  P K  +TYIFA++DE+ K  P  E+ FGLFKP     Y  G
Sbjct:  143 SYPPSQGSF-RGDVRSYLDPIIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYALFTSPNVVVRDGQYG--YQNLFDAMLDSVHAAIDNTRIGYVEVVVSESGWPSDGG---FGATYDNARVYLDNLVR--RAGRGSPRRPSKPTETYIFAMFDENQK-SPEIEKHFGLFKPSKEKKYPFG 314          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.147e-25
Identity = 73/184 (39.67%), Postives = 105/184 (57.07%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKS 548
            S PPS GSF R D    +  I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++AL   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K  P  E+ FGLF P+    Y++    S
Sbjct:  176 SYPPSQGSF-RNDARWFVDAIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSR-QYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNINFGVS 350          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.147e-25
Identity = 63/181 (34.81%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   15 PSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKS 548
            P   S  R++    +  I++FL  +  P   N YP+F +  +     L++ LF        + TG  Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G+      ++ENA+ Y  NL+ H++  AGTP  PG+ ++TY+FA++DE+ K G  +E+ FGLF P+ +A Y +    S
Sbjct:  177 PPKDSIFREELKSFINPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFNQQE---TNSTG--YQNLFDALLDSIYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLVNHVKGGAGTPKKPGRIIETYLFAMFDENEKQGEITEKHFGLFYPNRAAKYQLNFMYS 349          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.554e-25
Identity = 75/189 (39.68%), Postives = 110/189 (58.20%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDV--GISKSSQT 557
            S PPS GSF R D    +  I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++AL   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  P + ++TYIFA++DE+ K  P  E+ FGLF P+    Y++  G+S S +T
Sbjct:  176 SYPPSQGSF-RNDARWFVDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSR-QYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLKNLIQHAKE--GSPRKP-RPIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNFGVSGSVET 355          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 3.336e-25
Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTM---RGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKS 548
            S PPS GSF R D       I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++AL   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K  P  E+ FGLF P+    Y++    S
Sbjct:  177 SYPPSQGSF-RNDARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSR-QYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNINFGVS 351          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.357e-25
Identity = 72/186 (38.71%), Postives = 107/186 (57.53%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTM---RGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSSQ 554
            S PPS GSF R D       I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++A++  G   V IVV+E+GWP  G     G + ENA+ Y  NLI H +   G+P  PG  ++TYIFA++DE+ K  P  E+ FG+F P+    Y++    S +
Sbjct:  168 SYPPSQGSF-RNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSR-QYRNLFDAMLDSVYAAMDRTGGGSVGIVVSESGWPSAG---AFGATHENAQTYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK-NPELEKHFGMFSPNKQPKYNLNFGVSER 344          
The following BLAST results are available for this feature:
BLAST of DC900404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
GUB_NICPL1.354e-2639.57Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13J_TOBAC1.769e-2637.65Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13B_PRUPE6.722e-2636.31Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13C_TOBAC8.779e-2635.36Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13B_PHAVU8.779e-2640.33Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13E_TOBAC1.147e-2539.67Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13D_TOBAC1.147e-2534.81Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13B_NICPL2.554e-2539.68Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_TOBAC3.336e-2539.67Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_SOLLC4.357e-2538.71Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]

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Properties
Property NameValue
Genbank descriptionDC900404 VSS Citrus sinensis cDNA clone VS28980 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900404 ID=DC900404; Name=DC900404; organism=Citrus sinensis; type=EST; length=1138bp
CACAATCCGACCCGCCGTCCTCCGGGTCATTCATCCGCCAAGACACTATG
AGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTTACCATCAA
CCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGAGACTCTTG
CCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCGGGACCGGG
ATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTACATTCAGC
CTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGCAGAGACAG
GGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTGTTGAGAAT
GCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCAATGGCTGG
AACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTTTGCTCTCT
ATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAACGTTCATTCGGGCTC
TTCAAGCCAGACCTTTCAGCAGCATATGATGTTGGTATTTCAAAGAGTAG
CCAGACTCCATCAGCTCCAGTGACTCCATCAACTCCAAAAAACTCCAAAC
GACTCCATCACCAAAACCAACAGCAGCTGGTTGGTGTGTGCCCAAGGCCG
GCATCTCCGATGCACAACTGCAGGCAAGTCTTGACTATGCCTGCAGCCAA
GGCATCGATTGCAGTCCTATCCAGCCAGGAGGTGCCTGTTTTGAACCAAA
TACAGTAGTATCACATGCTGCTTTTGCCATGAATCTCTACTACCAGACTT
CTGCAAAAAATCCATGGAACTGCGACTTCTCAAAAACGGCAACACTCACA
TCCCAAAATCCCAGTTACAATGGATGTGTCTATCCTAGTGGGGGTACTTG
AAATGGCCAGACGAATTCCCAGTTGATGTTGAATAATGGAATGTTAAGTG
AAATAAAAGTGATGAATCTAATGGTTCCTATTTTATAGATAGCTTTAATT
GTAAAGGTTTCCTCCTCTGATTAAAATGTATCGAGGAAACTCTTTCTTTT
CTTCTCTTTTTTCTTATTTATTAAAATTATTTGTATCCCTATATTGAGAA
TAACATTAGTGGTTNAAATAAACTGTTTGAATATATTC
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