DC900402

Overview
NameDC900402
Unique NameDC900402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900402 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 2
Query:   50 LARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYC--DRYKLKEELGLLHFGWEDKSLIVASAWK 301
            L R I N++ACEG ER ER+E  G+WR R+  AGF +  + ++       L+  +   D YK++E+ G L  GW  + LI  SAW+
Sbjct:  534 LGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWR 619          
BLAST of DC900402 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 2
Query:   50 LARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQY--CDRYKLKEELGLLHFGWEDKSLIVASAWK 301
            L R I+N++ACEGE+R+ER+E   +WR R  + GF    + ++       L+  Y   D Y ++E  G L  GW+ + LI  SAW+
Sbjct:  421 LGRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGCLLLGWQTRPLIATSAWR 506          
BLAST of DC900402 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 2
Query:   50 LARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYC--DRYKLKEELGLLHFGWEDKSLIVASAWK 301
            L R I N++ACEG +R+ER+E   +WR RM  +GF    + ++       L+  +   D Y+++E  G L  GW  + LI  SAWK
Sbjct:  489 LGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWK 574          
BLAST of DC900402 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 2
Query:   50 LARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYC--DRYKLKEELGLLHFGWEDKSLIVASAWK 301
            L R I N++ACEG ER ER+E  G+WR R+  AGF    + ++       L+  +   D Y+++E+ G L  GW  + LI  SAW+
Sbjct:  536 LGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCLTLGWHTRPLIATSAWR 621          
BLAST of DC900402 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 2
Query:   50 LARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYC--DRYKLKEELGLLHFGWEDKSLIVASAWK 301
            L + I N++ACEG ER+ER+E   +WRAR+  AGF    + ++       L+  +   D Y+++E  G L  GW  + LI  SAW+
Sbjct:  490 LGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ 575          
BLAST of DC900402 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 2
Query:   50 LARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPMSADVTDMIRKLIKQYC--DRYKLKEELGLLHFGWEDKSLIVASAWK 301
            L R I N++ACEG ER ER+E  G+WR+R+  +GF    + ++       L+  +   D Y+++E+ G L  GW  + LI  SAW+
Sbjct:  538 LGRQICNVVACEGAERTERHETLGQWRSRLGGSGFAPVHLGSNAYKQASTLLALFAGGDGYRVEEKDGCLTLGWHTRPLIATSAWR 623          
The following BLAST results are available for this feature:
BLAST of DC900402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RHT1_WHEAT3.271e-1239.53DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
RGL1_ARATH7.287e-1237.21DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
GAI_SOLLC7.287e-1237.21DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
SLR1_ORYSJ9.517e-1238.37DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
GAI1_VITVI1.623e-1137.21DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
DWRF8_MAIZE1.623e-1137.21DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900402 VSS Citrus sinensis cDNA clone VS28977 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900402 ID=DC900402; Name=DC900402; organism=Citrus sinensis; type=EST; length=528bp
CTCGTGCCGAATTCGGCACGAGNATAGAATGAACGTCGAACGGCAATGCC
TGGCACGTGACATTGTTAACATCATTGCATGTGAGGGAGAGGAACGGATA
GAACGGTATGAGCTTGCAGGGAAATGGAGGGCAAGGATGACCATGGCTGG
GTTCACTTCATGCCCAATGAGTGCTGATGTGACTGATATGATTCGGAAAC
TTATAAAGCAATACTGTGACAGGTACAAGTTGAAGGAGGAATTGGGTCTA
CTGCATTTTGGGTGGGAAGACAAAAGCTTGATCGTTGCTTCTGCATGGAA
GTAGCAAGTACAATTCTGGATTTTTTCGTTTTCGTTTCCCCTTTTTTTTT
TTTTTCATTTTTTTACCGAGTGATAGTTGTAAAATATTTTTCGGTGGTTG
TCCACTTGATATTTCATTTAGATTGAGGTTGAAGAACGAAGAAGCTTGTT
AATGTTTTGCTAATGTAAATTTCGCTGATGATTGGGCTTGCTGATTATCT
AACGTTTATGAATAATTTATTCTGCTGC
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