DC900399

Overview
NameDC900399
Unique NameDC900399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.298e-21
Identity = 75/238 (31.51%), Postives = 124/238 (52.10%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHA-WG*PLDLSGLDPFIGAALAAVYHQIVI 789
            RA +AEF +TF+F++    + + + K   ++  S   +  +A A    +FA V  +  +SGGH+NPAV+FG L+  ++S+ RAV+Y + Q LG++  A V++               N+   G+    G+G       E++ TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +++  + H  W     +  + P +GAALAA+ ++  +
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQWHQHW-----IFWVGPLLGAALAALVYEYAV 238          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.298e-21
Identity = 78/229 (34.06%), Postives = 112/229 (48.91%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHA-WG*PLDLSGLDPFIGAALAAVYHQIVI 789
            RA  AEF+AT L+++  V +VM         +   +  IA  F  +    V  T   SG H NPAVT   L+   +SL RAV Y+  Q +GA  GA ++ G       E L  G NVV +  + G  +  E++ T  LV  VF++TD+++ +            IG +V L HL  I  TG  +NPARS G AII  K    W     +  + P +GA LA++ +  V+
Sbjct:   25 RALFAEFLATGLYVFFGVGSVM-----RWPTALPSVLQIAITFNLVTAMAVQVTWKASGAHANPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDIRETL--GINVVRNSVSTGQAVAVELLLTLQLVLCVFASTDSRQTSGS------PATMIGISVALGHLIGIHFTGCSMNPARSFGPAIIIGKFTVHW-----VFWVGPLMGALLASLIYNFVL 235          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.586e-20
Identity = 80/240 (33.33%), Postives = 112/240 (46.67%), Query Frame = 1
Query:  115 IAEFMATFLFLY------ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGA-VCGAGVVKGFEGSKNYERLGGGANVVAHGY----TKGDGLGA----EIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAA-VYHQIV 786
            IAEF+ TF  +       +    +      NT    +G  G+A AFG  +F   Y    ISGGH NPAV+FGL + ++   ++   Y+  Q LGA V    +    +G  N+  L G   +  +G+     +G G  A    E + TF+ +  +   TD    A        AP  IG A+ L+HL +IPIT T +NPARS G A+        G  L L  L P  GA LA  VYH ++
Sbjct:    5 IAEFIGTFWLVLGGCGSAVFAAFIAAPGGGNTNEFGLGYLGVALAFGLTVFTGAYALGHISGGHFNPAVSFGLWMGKRFPGSQLAPYIGAQVLGAIVASLFIFIVAQGGPNFS-LDGSNPLATNGFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVALFCGNPALIG-QLWLFWLAPIAGALLAGFVYHNVL 236          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_CHRVO (Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.586e-20
Identity = 77/232 (33.19%), Postives = 109/232 (46.98%), Query Frame = 1
Query:  118 AEFMATF-LFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG-*PLDLSGLDPFIGAALAAVYHQIV 786
            AEF+ TF L L      V+     N     +G  G+A AFG  +  + Y    ISG H+NPAV+ GL    +    +   Y+V Q LGA+    V+        GF+ +K +    G A     GY+    L  E++ T   +  +  ATD +  A        APL IG A+ L+HL +IP+T T +NPARS G A+       W    L L  L P IGA L A  ++++
Sbjct:    6 AEFLGTFWLVLGGCGSAVLAAGFPNLG---IGFAGVALAFGLTVVTMAYAIGHISGCHLNPAVSIGLWAGGRFPAGQLAPYIVAQVLGAIAAGAVLYVIASGGAGFDVAKGFAS-NGYAEHSPGGYSLLAALVCEVVMTMFFLLVIMGATDKRAPAG------FAPLAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG---GWAVQQLWLFWLAPIIGAVLGAKVYRLI 224          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 6.027e-20
Identity = 77/233 (33.05%), Postives = 116/233 (49.79%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF-NKDHAWG*PLDLSGLDPFIGAALAA-VYHQIVI 789
            +A +AEF+AT LF++  V + +  S+          G+  IA A    +F  V   A ISGGH+NPAVTFGL +   +++   + Y V Q LGA     +++     +     G        G ++ +G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS G A+   N    W     +  + P +G  LA  VY  + I
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHG------VSGISEIEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNW-----VYWVGPLVGGGLAGLVYGDVFI 236          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ2_AGRT5 (Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.872e-20
Identity = 68/195 (34.87%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGAN-----VVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG-*PLDLSGLDPFIGAALAAV 771
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +   +  V Y++ Q  GA+  A  +      K    LGG A+         GY+    L  EII T   +  +  +T  +  A        AP+ IG A+ L+HL +IP+T T +NPARS G A+       W    L L  L P +G A  AV
Sbjct:   34 IGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG---GWALQQLWLFWLAPIVGGAAGAV 219          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.028e-19
Identity = 73/231 (31.60%), Postives = 115/231 (49.78%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII-FNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            RA +AEF++T +F++    + +  +K     +T   G+   A A    +F  V   A ISGGH+NPAVTFG+LL   ++L R + Y + Q LG+V    ++    G +     G     ++ G    + L  EI+ TF LVYTV+ +A D K  +    +  +AP+ IGF V    LA    +G  +NPA + G A++ +   + W     +    P IG  LA + +  V
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFG-----LSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHW-----VYWAGPLIGGGLAGIIYDFV 238          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.028e-19
Identity = 77/240 (32.08%), Postives = 111/240 (46.25%), Query Frame = 1
Query:  100 FYRAGIAEFMATFLFLYI---TVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGV-------VKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG-*PLDLSGLDPFIGAALAAVYHQIV 786
            F R G AEF  TF  +     + +   GV +       +G  G+A AFG  +  + Y    ISGGH NPAVT GL  + +        Y+V Q +GA+  A         V GF+   +     G  +     Y+    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ L+HL +IP+T T +NPARS G A+       W    L L  L P  GA + A+ +++V
Sbjct:    5 FKRCG-AEFFGTFWLVLGGCGSAVLAAGVPQVG-----IGYAGVALAFGLTVLTMAYAVGHISGGHFNPAVTVGLAASGRFGWRDVPPYIVAQVVGAIVAAATLASIAQGVAGFDLVASKFAANGYGDHSPGKYSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVG---GWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.028e-19
Identity = 77/240 (32.08%), Postives = 111/240 (46.25%), Query Frame = 1
Query:  100 FYRAGIAEFMATFLFLYI---TVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGV-------VKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG-*PLDLSGLDPFIGAALAAVYHQIV 786
            F R G AEF  TF  +     + +   GV +       +G  G+A AFG  +  + Y    ISGGH NPAVT GL  + +        Y+V Q +GA+  A         V GF+   +     G  +     Y+    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ L+HL +IP+T T +NPARS G A+       W    L L  L P  GA + A+ +++V
Sbjct:    5 FKRCG-AEFFGTFWLVLGGCGSAVLAAGVPQVG-----IGYAGVALAFGLTVLTMAYAVGHISGGHFNPAVTVGLAASGRFGWRDVPPYIVAQVVGAIVAAATLASIAQGVAGFDLVASKFAANGYGDHSPGKYSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVG---GWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.754e-19
Identity = 65/232 (28.02%), Postives = 115/232 (49.57%), Query Frame = 1
Query:  103 YRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVK-GFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNK-DHAWG*PLDLSGLDPFIGAALAAVYHQIVIR 792
            +R  + E + TF  +++ V    G + S +      +  IA+ FG  +  +      +SG HINPAVT G L+  ++S+ +A FY+++QC+GA+ GA V+K   +G    +    G +           +  E + TF+LV+ V + +D  R      +   APL +G A+   HL  I ++G  +NPARS G A++     + W     +  + P  G  LA + ++++ +
Sbjct:   23 WRMLLGELVGTFFLIFVGV----GSTTSGS------VPQIAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVALDGVAGGDL---GVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGR----QDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQGVWTYHW-----VYWVGPIAGGLLAGIIYRLIFK 232          
The following BLAST results are available for this feature:
BLAST of DC900399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TIPA_PHAVU9.298e-2131.51Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
AQP6_HUMAN9.298e-2134.06Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
AQPZ_SYNY31.586e-2033.33Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQPZ_CHRVO1.586e-2033.19Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ P... [more]
TIP23_MAIZE6.027e-2033.05Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
AQPZ2_AGRT57.872e-2034.87Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain... [more]
TIP12_ARATH1.028e-1931.60Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
AQPZ_BORPA1.028e-1932.08Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR1.028e-1932.08Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
AQP_DROME1.754e-1928.02Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900399 VSS Citrus sinensis cDNA clone VS28973 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900399 ID=DC900399; Name=DC900399; organism=Citrus sinensis; type=EST; length=998bp
GAGAGGCAACCCATTGGGACATCAGCTCAATCAGACAAAGACTACAAGGA
GCCACCACCAGCACCTTTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCTT
TTTACAGAGCTGGTATTGCAGAGTTCATGGCTACCTTCTTGTTCCTCTAC
ATCACTGTCTTGACTGTCATGGGTGTCTCTAAGTCTAACACCAAGTGCTC
CACTGTCGGTATCCAAGGAATTGCTTGGGCCTTTGGTGGCATGATCTTTG
CGCTTGTTTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCA
GTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTTTCCCTGACAAGGGCTGT
CTTCTACATGGTCATGCAGTGCCTTGGTGCTGTCTGTGGTGCTGGTGTTG
TCAAGGGATTCGAAGGTTCAAAGAACTACGAGAGGTTGGGTGGTGGAGCC
AATGTTGTTGCTCACGGCTACACCAAGGGTGATGGTCTTGGTGCTGAGAT
TATTGGAACCTTTGTTCTTGTTTACACTGTCTTCTCTGCCACTGATGCGA
AGAGAAACGCCAGAGACTCTCATGTCCCTATTTTGGCCCCCCTCCCCATT
GGATTTGCTGTTTTCTTGGTCCACCTGGCCACCATCCCCATCACAGGAAC
TGGCATCAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTCAACAAAG
ACCATGCCTGGGGATGACCATTGGATCTTTCTGGGTTGGACCCATTCATT
GGAGCTGCACTGGCTGCTGTGTACCACCAGATAGTCATCAGGGCCATTCC
CTTCAAGTCCAGGGCTTAAAAAAGTTCACTGATGGANCNTTTTTTTTTTT
AATTTGGATCTTCTTTGTCGGGTCTTTTTGTTTATGNGCATTTGGTGTTT
AACTGTTTAAAATGTTAATTAATTGTGTGTAAATTATCTAGCATTGCTGA
ATTTTTTTTTTTTTAAGCTTTTGATTGGAGGATTCATTTTTTAGTCTT
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