DC900399

Overview
NameDC900399
Unique NameDC900399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:125..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.754e-19
Identity = 62/201 (30.85%), Postives = 99/201 (49.25%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            +G+ G++ AFG  +  + +    ISG H+NPAVT GL    +      V Y++ Q +G V   GV+        GF+ + +     G       GY+    L  E++ T + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPARS G A ++  D A    L L  + P +GA L AV ++++
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLYTIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATA-QLWLFWVAPILGALLGAVAYKLI 225          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_PHOLL (Aquaporin Z OS=Photorhabdus luminescens subsp. laumondii GN=aqpZ PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.754e-19
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFN 696
            +G  G++ AFG  +  ++Y    ISGGH NPAVT GL    +      + Y++ Q +G +  A V+        GF+ + +     G       G++    + AEI+ T + +  +  ATD +        P  APL IG A+ L++L +IPIT T +NPARS   AI  N
Sbjct:   34 IGFVGVSLAFGLTVLTMIYAVGHISGGHFNPAVTIGLWAGGRFRAVEVIPYIISQVIGGILAAAVLYVIASGQVGFDATTSGFASNGFGEHSPGGFSLQSAIVAEIVLTAIFLIVIIGATDRRA------PPGFAPLAIGLALVLINLISIPITNTSVNPARSTAVAIFQN 198          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.290e-19
Identity = 74/236 (31.36%), Postives = 125/236 (52.97%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGA-VCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGA----EIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII-FNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            +AG+AEF++TF+F++    + +  +K  ++   +  G+   + A    +F  V   A ISGGH+NPAV FG  +   ++L R + Y++ Q LG+ VC A +V               ++V A G ++G G+G     EI+ TF LVYTV++ A D K+     ++ I+AP+ IGF V    L     TG  +NPA S G A++ ++  + W     +    P IG  +A + ++++
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLV-----------FVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKG----NIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHW-----VYWAGPLIGGGIAGLVYEVL 235          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_RHOPA (Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.290e-19
Identity = 63/201 (31.34%), Postives = 102/201 (50.75%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            +G+ G++ AFG  +  + Y    ISG H+NPAVT GL    +  + +   Y++ Q LGA+  A ++        GF+ +K +   G GA+     Y        E++ T + ++ +  +T  K  A        APL IG A+ ++HL +IP+T T +NPARS G A +F    A G  L L  + P +G  L  V ++++
Sbjct:   35 IGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTLGLAAGGRFPVKQIAPYIIAQVLGAIAAAALLYLIASGAAGFDLAKGFASNGYGAHSPGQ-YNLVACFVMEVVMTMMFLFVIMGSTHGKAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPA-LFVGGWAIG-QLWLFWVAPLLGGVLGGVIYRVL 226          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.991e-19
Identity = 76/243 (31.28%), Postives = 112/243 (46.09%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYI----TVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIG---TFVLVYTVFSATDAKRNA----RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII----FNKDHAWG*PLDLSGLDPFIGAALAAVYHQIVI 789
            RA  AEF +TFLF++I    T+   M      +  S++    +A AFG  +FA V+  A +SGGH+NPAVTF   +   +++  A+FY   Q LG+     V+             G A        +  G GA I+    TF++VYTV  A D +       +      L  L +G       LA   +TG  +NPARS G A++     N+   W          P +GAA+AA+ HQ ++
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYIS--------AGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVHVAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWA--------GPMVGAAVAALVHQALV 242          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.102e-19
Identity = 75/244 (30.74%), Postives = 119/244 (48.77%), Query Frame = 1
Query:   67 LFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII-FNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            ++ PG LK      A +AEF++T +F++    + M  SK     +T   G+   A A    +F  V   A ISGGH+NPAVTFG  +   ++L R + Y + Q LG+     +++   G       G        G +  + L  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    L      G  +NPA S G A++ ++ +  W     +  + P IG  LA V ++++
Sbjct:   14 VYHPGALK------AALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG------LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQW-----VYWVGPLIGGGLAGVIYEVL 236          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.102e-19
Identity = 62/201 (30.85%), Postives = 98/201 (48.76%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            +G+ G++ AFG  +  + +    ISG H+NPAVT GL    +      V Y++ Q +G V   GV+        GF+ + +     G       GY+    L  EI+   + +  +  ATD +           AP+ IG  + L+HL +IP+T T +NPARS G A ++  D A    L L  + P +GA L AV ++++
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLYTIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEIVMAMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATA-QLWLFWVAPILGALLGAVAYKLI 225          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.664e-19
Identity = 77/232 (33.19%), Postives = 116/232 (50.00%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA-TDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNK--DHAWG*PLDLSGLDPFIGAALAA-VYHQIVI 789
            +A I EF+ TFLF++  V + M    S    + VG+  +A A    + A++     ISGGH+NPAVT GLLL   +S+ RA  Y + Q L +     ++    G      +G   + +A G +   G+  EII TF L++TV++   D K+ + D   P+L     GF V    LA    +G  +NPARS G A++     DH W     +  + P IG  LA  +Y  ++I
Sbjct:   19 KALIVEFITTFLFVFAGVGSAMATD-SLVGNTLVGLFAVAVAHA-FVVAVMISAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGG-----MGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGNWTDH-W-----VYWVGPLIGGGLAGFIYENVLI 233          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.664e-19
Identity = 75/244 (30.74%), Postives = 117/244 (47.95%), Query Frame = 1
Query:   67 LFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII-FNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            ++ PG LK      A  AEF++T +F++    + M  SK       +  G+   A A    +F  V   A ISGGH+NPAVTFG  +   ++L R + Y V Q LG+     +++   G +     G        G +  + L  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    L      G  +NPA S G A++ +   + W     +  + P IG  LA V ++++
Sbjct:   14 VYHPGALK------AAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFG------LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWEWGYQW-----VYWVGPLIGGGLAGVIYELL 236          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.664e-19
Identity = 78/263 (29.66%), Postives = 124/263 (47.15%), Query Frame = 1
Query:   22 SAQSDKDYKEPPPAP----LFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNY---ERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            S    +D  + P AP    +   G   S++F +  +AEF+ATF  ++      +G      K   V   G+A A+G  + A+VY    +SG H+NPAVT G  +A +    RA  Y + Q   A   + V++   G ++      L GGA+           L  E + TF L++ + + ATD      D  V  +A + +G  + L  L   P++G  +NPARS+G A++ +K  A    L +  L PF GAA  A  + ++
Sbjct:   25 SKMDKEDDHQNPQAPDGGDVVVCGMPMSFTFLQMLLAEFLATFFLMFAG----LGAITVEEKKGAVTFPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAH--------AQSLVIEFVITFYLMFVIMAVATD------DQAVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTA----LWVYILGPFAGAAAGAWAYSLI 265          
The following BLAST results are available for this feature:
BLAST of DC900399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQPZ_VIBVU1.754e-1930.85Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
AQPZ_PHOLL1.754e-1932.75Aquaporin Z OS=Photorhabdus luminescens subsp. lau... [more]
TIP1_MEDSA2.290e-1931.36Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQPZ_RHOPA2.290e-1931.34Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ ... [more]
TIP51_ORYSJ2.991e-1931.28Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP11_ORYSJ5.102e-1930.74Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
AQPZ_VIBVY5.102e-1930.85Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]
TIP41_ARATH6.664e-1933.19Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP11_MAIZE6.664e-1930.74Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
NIP14_ORYSJ6.664e-1929.66Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionDC900399 VSS Citrus sinensis cDNA clone VS28973 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900399 ID=DC900399; Name=DC900399; organism=Citrus sinensis; type=EST; length=998bp
GAGAGGCAACCCATTGGGACATCAGCTCAATCAGACAAAGACTACAAGGA
GCCACCACCAGCACCTTTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCTT
TTTACAGAGCTGGTATTGCAGAGTTCATGGCTACCTTCTTGTTCCTCTAC
ATCACTGTCTTGACTGTCATGGGTGTCTCTAAGTCTAACACCAAGTGCTC
CACTGTCGGTATCCAAGGAATTGCTTGGGCCTTTGGTGGCATGATCTTTG
CGCTTGTTTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCA
GTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTTTCCCTGACAAGGGCTGT
CTTCTACATGGTCATGCAGTGCCTTGGTGCTGTCTGTGGTGCTGGTGTTG
TCAAGGGATTCGAAGGTTCAAAGAACTACGAGAGGTTGGGTGGTGGAGCC
AATGTTGTTGCTCACGGCTACACCAAGGGTGATGGTCTTGGTGCTGAGAT
TATTGGAACCTTTGTTCTTGTTTACACTGTCTTCTCTGCCACTGATGCGA
AGAGAAACGCCAGAGACTCTCATGTCCCTATTTTGGCCCCCCTCCCCATT
GGATTTGCTGTTTTCTTGGTCCACCTGGCCACCATCCCCATCACAGGAAC
TGGCATCAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTCAACAAAG
ACCATGCCTGGGGATGACCATTGGATCTTTCTGGGTTGGACCCATTCATT
GGAGCTGCACTGGCTGCTGTGTACCACCAGATAGTCATCAGGGCCATTCC
CTTCAAGTCCAGGGCTTAAAAAAGTTCACTGATGGANCNTTTTTTTTTTT
AATTTGGATCTTCTTTGTCGGGTCTTTTTGTTTATGNGCATTTGGTGTTT
AACTGTTTAAAATGTTAATTAATTGTGTGTAAATTATCTAGCATTGCTGA
ATTTTTTTTTTTTTAAGCTTTTGATTGGAGGATTCATTTTTTAGTCTT
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