DC900399

Overview
NameDC900399
Unique NameDC900399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:125..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_SHEON (Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.939e-18
Identity = 64/199 (32.16%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAAVYHQ 780
            +G+ G++ AFG  +  + +    ISG H+NPAV+FGL    +   +  + Y++ Q  G + GAGV+       +GF  +  +   G G +    GY+    +  EI+ T   +  +  +TD +           AP+ IG  + L+HL +IPI+ T +NPARS G A +F  D A    L L    P IGA LA V ++
Sbjct:   34 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVSFGLWAGGRFPTSELLPYIIAQVAGGIAGAGVLYLIASGQEGFSLAAGFASNGFGEHSPG-GYSMISVMICEIVMTLFFLLVILGSTDERAPKG------FAPIAIGLCLTLIHLISIPISNTSVNPARSTGPA-LFVGDWAVS-QLWLFWAAPIIGAILAGVIYR 223          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.532e-18
Identity = 74/243 (30.45%), Postives = 116/243 (47.74%), Query Frame = 1
Query:   76 PGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDG-LGA---EIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII-FNKDHAWG*PLDLSGLDPFIGAALAAVYHQI 783
            P E       +A +AEF++T +F+     + M  +K     +T   G+   A A    +F  V   A ISGGH+NPAVTFG  +   ++L R + Y + Q LG+V    ++K            GG  V A G + G G L A   EI+ TF LVYTV++     +N     +  +AP+ IGF V    LA    +G  +NPA + G A++ +   + W     +    P +G  +A + +++
Sbjct:   11 PDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK---------FATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKN---GSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHW-----VYWAGPLVGGGIAGLIYEV 236          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.368e-18
Identity = 74/242 (30.58%), Postives = 112/242 (46.28%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSKSNTK--CSTVG---IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA------RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF----NKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            R+ +AEF++TFLF++  V + +      T    S+ G      +A AFG  +FA V   A +SGGH+NPAVTF   +  ++ +  A+FY   Q LGA      +  F   +           +A   T   G   E + TF+LVYTV    + +  +      R+     L  L +G       LA   +TG  +NPARS G A++     N+   W          P +GAA+AA+ +QI+
Sbjct:   20 RSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFG--LFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVP-----TTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFKNQAVYWA--------GPMVGAAVAALVYQIM 246          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEAE (Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.368e-18
Identity = 63/201 (31.34%), Postives = 105/201 (52.24%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAAVYHQIV 786
            +G  G+A AFG  +  + Y    ISG H+NPAV+ GL +  +   ++ + Y+V Q LG +   GV+        GF+ +  +   G G +    GY+    L +E++ T + +  +  AT +KR  +       AP+ IG  + L+HL +IP+T T +NPARS   A ++  D A    L L  + P +GA L A+ ++++
Sbjct:   33 IGYLGVALAFGLSVLTMAYAIGPISGAHLNPAVSVGLWVGGRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNGYGEHSPG-GYSLQAALVSEVVLTGMFLLIILGAT-SKRAPQG-----FAPIAIGLTLTLIHLISIPVTNTSVNPARSTAVA-LYVGDWAVS-QLWLFWVAPILGAVLGALAYRLI 224          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.257e-17
Identity = 76/246 (30.89%), Postives = 124/246 (50.41%), Query Frame = 1
Query:   91 SWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNY-------ERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFN--KDHAWG*PLDLSGLDPFIGAALAA-VYHQIVI 789
            S +  R  ++EF++TF F+   V +VM   K  +       G+   A A    + + VY +  +SGGH+NPAVTF + +A ++S+  A+FY   Q + +V    V+K     ++        E  G GA+V+            E +  FVLVYTVF+A+D +R      +P+ + P+ IGF      LA  P +G  +NPA + G+A+++   K+ A      +  + P +G A AA VY  +V+
Sbjct:   18 SMNALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVL------------EGVLAFVLVYTVFTASDPRRG-----LPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQA------VYWVGPLLGGATAALVYDNVVV 240          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.257e-17
Identity = 61/200 (30.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG-*PLDLSGLDPFIGAALAAVYHQ 780
            +G+ G++ AFG  +  + Y    ISG H+NPAVT GL    +    + + Y++ Q  GA+  A ++        GF+ +K +   G  A+     Y+       E++ T + ++ +  AT  +  A        APL IG A+ ++HL +IP+T T +NPARS G A+       W    L L  + P IG AL  V ++
Sbjct:   35 IGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQ-YSMMACFLTEVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPALFVG---GWAMAQLWLFWVAPLIGGALGGVIYR 224          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.144e-17
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:   79 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAG--ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNK-DHAWG*PLDLSGLDPFIGAALAAVYHQIVIRA 795
            GE     F+R  + E + TFLF++I V   M    + TK ST G    A A G  +   V  TAG  ISGGH+NPAVT  L +   ++L R+  Y+  Q L +     +++   G      L    + +A G     G+ AE + TF L++ +++     R      +P   PL  G  V    +A   ++G  +NPARS G A+      H W     +  + P  G  LA + ++    A
Sbjct:   10 GEASEPDFFRGVLGELVLTFLFVFIGVGAAM-TDGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGG-----LATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKL----LPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASGVWTHHW-----VYWVGPLAGGPLAVLVYECCFMA 236          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.657e-17
Identity = 69/228 (30.26%), Postives = 107/228 (46.93%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV-GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNK--DHAWG*PLDLSGLDPFIGAALAAVYHQ 780
            RA +AE + TFLF++  V + M  +K      T+ G+  +A A   ++  +V     +SGGHINPAVT GL     ++L R+  Y   Q LG+     ++    G +         +  A G      +  E + TF L++ V++    +R A    V  L PL +G  V    LA  P +G  +NPARS G A+   +  DH W     +  + P IG  LA + ++
Sbjct:   19 RAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEE----AVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA----VGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADH-W-----IYWVGPLIGGPLAGLVYE 232          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.657e-17
Identity = 71/229 (31.00%), Postives = 107/229 (46.72%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHA-WG*PLDLSGLDPFIGAALAAVYHQIVI 789
            +A  AEF+AT L+++  V +V+         +   +  +A  F       V  +   SG H NPAVT   L+   +SL RAV Y+  Q  GA  GA ++ G       E L  G NVV +  + G  +  E++ T  LV  VF++ D+++              IG +V L HL  I  TG  +NPARS G A+I  K    W     +  + P  GA LA++ +  ++
Sbjct:   22 KALFAEFLATGLYVFFGVGSVLP-----WPVALPSVLQVAITFNLATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALLYGVTPGGVRETL--GVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDSRQTLGS------PAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHW-----IFWVGPLTGAVLASLIYNFIL 232          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.657e-17
Identity = 72/230 (31.30%), Postives = 109/230 (47.39%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLP-IGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHA-WG*PLDLSGLDPFIGAALAAVYHQIVI 789
            +A  AEF+AT L+++  V +V+         +   +  IA  F       V  +   SG H NPAVT   L+   +SL RA+ Y+  Q  GA  GA ++ G       E L  G NVV +  + G  +  E++ T  LV  VF++ D ++        + +P   IG +V L HL  I  TG  +NPARS G A+I  K    W     +  + P  GA LA++ +  ++
Sbjct:   22 KALFAEFLATGLYVFFGVGSVLP-----WPVALPSVLQIAITFNLATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALLYGVTPGGIRETL--GVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQT-------LASPAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHW-----IFWVGPLTGAVLASLIYNFIL 232          
The following BLAST results are available for this feature:
BLAST of DC900399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQPZ_SHEON1.939e-1832.16Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 ... [more]
TIP11_ARATH2.532e-1830.45Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP51_MAIZE7.368e-1830.58Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
AQPZ_PSEAE7.368e-1831.34Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3... [more]
TIP51_ARATH1.257e-1730.89Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQPZ_BRAJA1.257e-1730.50Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
TIP43_MAIZE2.144e-1729.75Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP43_ORYSJ3.657e-1730.26Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
AQP6_RAT3.657e-1731.00Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
AQP6_MOUSE3.657e-1731.30Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900399 VSS Citrus sinensis cDNA clone VS28973 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900399 ID=DC900399; Name=DC900399; organism=Citrus sinensis; type=EST; length=998bp
GAGAGGCAACCCATTGGGACATCAGCTCAATCAGACAAAGACTACAAGGA
GCCACCACCAGCACCTTTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCTT
TTTACAGAGCTGGTATTGCAGAGTTCATGGCTACCTTCTTGTTCCTCTAC
ATCACTGTCTTGACTGTCATGGGTGTCTCTAAGTCTAACACCAAGTGCTC
CACTGTCGGTATCCAAGGAATTGCTTGGGCCTTTGGTGGCATGATCTTTG
CGCTTGTTTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCA
GTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTTTCCCTGACAAGGGCTGT
CTTCTACATGGTCATGCAGTGCCTTGGTGCTGTCTGTGGTGCTGGTGTTG
TCAAGGGATTCGAAGGTTCAAAGAACTACGAGAGGTTGGGTGGTGGAGCC
AATGTTGTTGCTCACGGCTACACCAAGGGTGATGGTCTTGGTGCTGAGAT
TATTGGAACCTTTGTTCTTGTTTACACTGTCTTCTCTGCCACTGATGCGA
AGAGAAACGCCAGAGACTCTCATGTCCCTATTTTGGCCCCCCTCCCCATT
GGATTTGCTGTTTTCTTGGTCCACCTGGCCACCATCCCCATCACAGGAAC
TGGCATCAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTCAACAAAG
ACCATGCCTGGGGATGACCATTGGATCTTTCTGGGTTGGACCCATTCATT
GGAGCTGCACTGGCTGCTGTGTACCACCAGATAGTCATCAGGGCCATTCC
CTTCAAGTCCAGGGCTTAAAAAAGTTCACTGATGGANCNTTTTTTTTTTT
AATTTGGATCTTCTTTGTCGGGTCTTTTTGTTTATGNGCATTTGGTGTTT
AACTGTTTAAAATGTTAATTAATTGTGTGTAAATTATCTAGCATTGCTGA
ATTTTTTTTTTTTTAAGCTTTTGATTGGAGGATTCATTTTTTAGTCTT
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