DC900399

Overview
NameDC900399
Unique NameDC900399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:125..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.776e-17
Identity = 72/256 (28.12%), Postives = 122/256 (47.66%), Query Frame = 1
Query:   64 PLFEPGEL-------KSWSFYRAGIAEFMATFLFLYI---TVLTVMGVSKSNTKCSTVG--IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNK-DHAWG*PLDLSGLDPFIGAALAAVYHQIVIR 792
            PL +P ++       K    ++   +EF+ T   +Y    +V     V+  +   + +G  IQG+A A      AL++  +G+SG ++NPAVT   LL+ ++ L  +++Y+  Q LG + GAG++ G     N  R+  G   +A G   G     E++ T +L   V     +  N  D  +  +AP  IG A+F+        +G  +NP R LG +II     H W     +  L P +GA LAA  ++ +++
Sbjct:   14 PLKDPSKMIYRRPISKPVKAFKGFFSEFLGTLYLVYFCGGSVCAAFAVAGDSAARALLGGLIQGMALA------ALIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGILYGC--LPNMYRIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGT--SVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHW-----VYWLGPIVGAILAAFIYRCLLQ 254          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBPA (Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.237e-17
Identity = 61/199 (30.65%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGF-EGSKNYERLGGGANVVAHG------YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAAVYHQ 780
            +G+ G+A AFG  +  + +    ISG H+NPAVT GL    +        Y++ Q +G +   G++     G   ++ +G G     +G      Y+    L +EI+ T + +  +  ATD KR  +       AP+ IG  + L+HL +IP+T T +NPARS   A ++  D A    L L  + P +G  L AV ++
Sbjct:   33 IGLLGVALAFGLTVLTMAFAIGHISGCHLNPAVTVGLWAGGRFDTKDVAPYIIAQVIGGLIAGGILYVIATGQAGFDVVGSGFAANGYGEHSPGQYSMLAALVSEIVMTMMFLIVIMGATD-KRAPQG-----FAPIAIGLCLTLIHLISIPVTNTSVNPARSTAVA-MYVGDWAVS-QLWLFWVAPIVGGVLGAVIYK 223          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_SHIFL (Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 8.146e-17
Identity = 53/168 (31.55%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 687
            +G  G+A AFG  +  + +    ISGGH NPAVT GL    +      V Y++ Q +G +  A ++        GF+ + +     G       GY+    L  E++ +   +  +  ATD    A        AP+ IG A+ L+HL +IP+T T +NPARS   AI
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOLI (Aquaporin Z OS=Escherichia coli (strain K12) GN=aqpZ PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.146e-17
Identity = 53/168 (31.55%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 687
            +G  G+A AFG  +  + +    ISGGH NPAVT GL    +      V Y++ Q +G +  A ++        GF+ + +     G       GY+    L  E++ +   +  +  ATD    A        AP+ IG A+ L+HL +IP+T T +NPARS   AI
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.146e-17
Identity = 53/168 (31.55%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 687
            +G  G+A AFG  +  + +    ISGGH NPAVT GL    +      V Y++ Q +G +  A ++        GF+ + +     G       GY+    L  E++ +   +  +  ATD    A        AP+ IG A+ L+HL +IP+T T +NPARS   AI
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.146e-17
Identity = 53/168 (31.55%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  205 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 687
            +G  G+A AFG  +  + +    ISGGH NPAVT GL    +      V Y++ Q +G +  A ++        GF+ + +     G       GY+    L  E++ +   +  +  ATD    A        AP+ IG A+ L+HL +IP+T T +NPARS   AI
Sbjct:   34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 8.146e-17
Identity = 72/239 (30.13%), Postives = 109/239 (45.61%), Query Frame = 1
Query:  115 IAEFMATFLFLY-------ITVLTVMGVSKSNTKCSTVGIQG-------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI---IFNKDHAWG*PLDLSGLDPFIGAALAAVYHQ 780
            IAEF+ TF+ ++       +T++   G +  N     +G+ G       I  AFG  I A +Y    ISG HINPAVT GL   +K      V Y++ Q LGA  G+ +     G       G GA     G +    + AE++GTF+L+ T+      +R  +       A + IG  V  +      I+G+ +NPAR+ G  +   IF     W     +  + P +GA LAA+ +Q
Sbjct:    9 IAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWN-YYSIYVIGPIVGAVLAALTYQ 241          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.043e-16
Identity = 67/241 (27.80%), Postives = 111/241 (46.06%), Query Frame = 1
Query:   82 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAH--GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNK-DHAWG*PLDLSGLDPFIGAALAAVYHQIVIRA 795
            E+++  F+R+ I+E +A+F++++I      GV    +  S   +   A A G  +  L  C   ISG HINPAVT  L + R +S  RA  Y+  QC G + GA ++ G      Y+  G     ++H       +  G E I TF++V   F +TD  +    +     +   IG A       ++P     +NPARSLG + + NK D  W     +    P +G   + + ++ +  +
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVT-VPGYQ--GNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYSACCFVSMPY----LNPARSLGPSFVLNKWDSHW-----VYWFGPLVGGMASGLVYEYIFNS 279          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.280e-16
Identity = 71/235 (30.21%), Postives = 109/235 (46.38%), Query Frame = 1
Query:  100 FYRAGIAEFMATFLFLYI----TVLTVMGVSKSNTK-CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSGLDPFIGAALAAVYHQIVI 789
            F R  +AEF  T   +YI    T+     VS    + C    +QG A+A      A+++  +GISG  +NPAVT G +   ++ +   + +++ QC+GA+ GAG++K       YER    A  +A G     G   E++ T  LV+ V     A  N  D  +  +APL IG AV          TG  +NPARS G A+  +  H       +    P  G  +A ++ +I +
Sbjct:   30 FTRQLLAEFFGTLFVVYIVSGSTLAANFAVSDPIVRVCLICLVQGFAFA------AIIWSISGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKA-SLPTFYER-DLSATTLATGVNVARGFFLEMVTTSFLVFVVLGV--AVYNEWDPKISRVAPLAIGCAVIAGVGFLNLFTGGSLNPARSFGPAVFSDTWHRH----YIYWFGPICGGIIAGLFWRIFL 250          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.006e-16
Identity = 69/231 (29.87%), Postives = 106/231 (45.89%), Query Frame = 1
Query:  106 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGA---GVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFN--KDHAWG*PLDLSGLDPFIGAALAAVYH 777
            RA +AE + TFLF++  V + M   K       + VG+  +A A   ++  +V     +SGGHINPAVT GL    +++L R+  Y+  Q LG+         +   +       LG G   +        G+  E + TF L++ V++     R A     P+L  L +G  V    LA  P +G  +NPARS G A++     DH W     +  + P IG  LA + +
Sbjct:   19 RAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALR-------GVLMEAVLTFSLLFAVYATVVDPRRAVGGMGPLLVGLVVGANV----LAGGPFSGASMNPARSFGPALVAGVWADH-W-----VYWVGPLIGGPLAGLVY 232          
The following BLAST results are available for this feature:
BLAST of DC900399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQPA_DICDI4.776e-1728.13Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
AQPZ_VIBPA6.237e-1730.65Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=... [more]
AQPZ_SHIFL8.146e-1731.55Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2[more]
AQPZ_ECOLI8.146e-1731.55Aquaporin Z OS=Escherichia coli (strain K12) GN=aq... [more]
AQPZ_ECOL68.146e-1731.55Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO578.146e-1731.55Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
AQPM_METTM8.146e-1730.13Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
BIB_DROME4.043e-1627.80Neurogenic protein big brain OS=Drosophila melanog... [more]
AQPB_DICDI5.280e-1630.21Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
TIP44_MAIZE9.006e-1629.87Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900399 VSS Citrus sinensis cDNA clone VS28973 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900399 ID=DC900399; Name=DC900399; organism=Citrus sinensis; type=EST; length=998bp
GAGAGGCAACCCATTGGGACATCAGCTCAATCAGACAAAGACTACAAGGA
GCCACCACCAGCACCTTTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCTT
TTTACAGAGCTGGTATTGCAGAGTTCATGGCTACCTTCTTGTTCCTCTAC
ATCACTGTCTTGACTGTCATGGGTGTCTCTAAGTCTAACACCAAGTGCTC
CACTGTCGGTATCCAAGGAATTGCTTGGGCCTTTGGTGGCATGATCTTTG
CGCTTGTTTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCA
GTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTTTCCCTGACAAGGGCTGT
CTTCTACATGGTCATGCAGTGCCTTGGTGCTGTCTGTGGTGCTGGTGTTG
TCAAGGGATTCGAAGGTTCAAAGAACTACGAGAGGTTGGGTGGTGGAGCC
AATGTTGTTGCTCACGGCTACACCAAGGGTGATGGTCTTGGTGCTGAGAT
TATTGGAACCTTTGTTCTTGTTTACACTGTCTTCTCTGCCACTGATGCGA
AGAGAAACGCCAGAGACTCTCATGTCCCTATTTTGGCCCCCCTCCCCATT
GGATTTGCTGTTTTCTTGGTCCACCTGGCCACCATCCCCATCACAGGAAC
TGGCATCAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTCAACAAAG
ACCATGCCTGGGGATGACCATTGGATCTTTCTGGGTTGGACCCATTCATT
GGAGCTGCACTGGCTGCTGTGTACCACCAGATAGTCATCAGGGCCATTCC
CTTCAAGTCCAGGGCTTAAAAAAGTTCACTGATGGANCNTTTTTTTTTTT
AATTTGGATCTTCTTTGTCGGGTCTTTTTGTTTATGNGCATTTGGTGTTT
AACTGTTTAAAATGTTAATTAATTGTGTGTAAATTATCTAGCATTGCTGA
ATTTTTTTTTTTTTAAGCTTTTGATTGGAGGATTCATTTTTTAGTCTT
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