DC900399

Overview
NameDC900399
Unique NameDC900399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.041e-12
Identity = 62/201 (30.85%), Postives = 85/201 (42.29%), Query Frame = 1
Query:  118 AEFMATFLFLY-------ITVLTVMGVSKSNTKCSTVGIQG-------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 678
            AE + TF+ ++       IT++   G  K N     +G  G       I  AF   I A++Y    ISG HINPAVT  L    +      V Y+V Q +GA  G+ +     G       G GA     G   G  +  E IGTF+L+  +      +R       P  A L IG  V  +      ITG+ +NPAR+ G
Sbjct:   11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFG 206          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.890e-12
Identity = 56/198 (28.28%), Postives = 94/198 (47.47%), Query Frame = 1
Query:  100 FYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 690
            F +  IAE   T+  ++        V+ + +K   +   G+A  +G  +  +VY    ISG H NPAVT     + +    +   Y++ Q LGA   +G ++   G + +E   G    +  G ++   L  EII TF L++ +   ATD +       +  LA L +G  + L  L   P++G  +NPARS+G A++
Sbjct:   42 FIQKIIAEIFGTYFLMFAGC---GAVTINASKNGQITFPGVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLMFGGR-HEHFPG---TLPTG-SEVQSLVIEIITTFYLMFVISGVATDNRA------IGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALV 225          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: GLPF_STRR6 (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glpF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.030e-11
Identity = 67/234 (28.63%), Postives = 104/234 (44.44%), Query Frame = 1
Query:  121 EFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYT------KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI------IFNK-----DHAWG*PLDLSGLDPFIGAALAAV 771
            EF+ T + + +    V GV    TK ++ G   I   +G  +   V+ +  +S  H+NPAVT G+ L   L     + Y++ Q  GA+ G  ++   +   +YE      N++A   T          L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR LG  I      I NK      +AW     +  + P IGAALA +
Sbjct:    8 EFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAHLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQ-ILVWLQFKPHYEAEENAGNILATFSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAW-----IPVVGPVIGAALAVL 229          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP9_MOUSE (Aquaporin-9 OS=Mus musculus GN=Aqp9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.346e-11
Identity = 66/248 (26.61%), Postives = 105/248 (42.34%), Query Frame = 1
Query:  115 IAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG--------FEGSKNYERLGGGANVVAHGYTK-----GDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSG--------LDPFIGAALAAVYHQIVIR 792
            ++EF+ TF+ + +   ++     S  K    GI  I   F   +   +Y T G+SGGHINPAV+F +    ++   +  FY+  Q LGA  GA  V G        F   K       G   +   Y K           +++ T  L+  VF+  D    +R+  VP  L P+ IG  + ++  +    +G  +NPAR L    +F     WG  +   G        + P IGA L  + + + I+
Sbjct:   27 LSEFLGTFIMIVLGCGSIAQAVLSREKAG--GIITINIGFATAVVMALYATFGVSGGHINPAVSFAMCTFGRMEWFKFPFYVGAQLLGAFVGAATVFGIYYDGLMAFADGKLLITGENGTAFIFATYPKPFVSVPGAFVDQVVSTMFLLLIVFAIFD----SRNLGVPRGLEPIVIGLLIIVISCSLGLNSGCAMNPARDLSPR-LFTALAGWGFEVFTFGNNFWWIPVVGPMIGAVLGGLIYVLFIQ 267          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: NIP33_ORYSJ (Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica GN=NIP3-3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.758e-11
Identity = 60/191 (31.41%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  118 AEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 687
            AEF  TF+ ++ TVL+ + + + +    T  + GIA + G  +  LV     ISG H+NPA++  + +   L     + Y+  Q LGAV  +  VKG      Y  +  G   V +  T  +    E I TF L++ + + ATD       + V  L  + +G  V +  L   P TG  +NPAR++GAAI
Sbjct:   72 AEFFGTFILIF-TVLSTIIMDEQHKSIET--LLGIATSAGLAVTVLVLSLIHISGCHLNPAISIAMAVFGHLPSAHLLPYISSQILGAVAASFAVKGL-----YHPVNPGIVTVPNVGTV-EAFFVEFIITFFLLFIITALATD------PNAVKELIAVAVGATVMMNILVAGPSTGASMNPARTIGAAI 247          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP9_RAT (Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.998e-11
Identity = 66/248 (26.61%), Postives = 104/248 (41.94%), Query Frame = 1
Query:  115 IAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYT-------------KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG*PLDLSG--------LDPFIGAALAAVYHQIVIR 792
            ++EF+ TF+ + +   ++     S  +    GI  I   F   +   +Y T GISGGHINPAV+F +    ++   +  FY+  Q LGA  GA  V G          GG   VV    T                    +++ T  L+  VF+  D    +R+  VP  L P+ IG  + ++  +    +G  +NPAR L    +F     WG  +   G        + P IGA L  + + + I+
Sbjct:   27 LSEFLGTFIMIVLGCSSIAQAVLSRERFG--GIITINIGFASAVVMALYVTFGISGGHINPAVSFAMCAFGRMEWFKFPFYVGAQFLGAFVGAATVFGIYYDGLMAFAGGKLLVVGENATAFIFATYPAPFISTPGAFVDQVVSTMFLLLIVFAMFD----SRNLGVPRGLEPVVIGLLIIVLSCSLGLNSGCAMNPARDLSPR-LFTALAGWGFEVFTVGNNFWWIPVVGPMIGAFLGGLIYILFIQ 267          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.916e-11
Identity = 57/205 (27.80%), Postives = 91/205 (44.39%), Query Frame = 1
Query:  115 IAEFMATFLFLYITVLTVMGVSKSNTKCS-TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV--------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNK 699
            IAE + T    Y  + +  GV   N     T+   GI   +G ++  ++Y T  ISG H NPAVT    + R+    +   Y+  Q  G++  +  +        K F G+   +             + G  L AEII +F+L++ +   ATD++          LA + +G  + L      PI+G  +NPARSLG AI+  +
Sbjct:   46 IAEMIGT----YFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTD-------------SSGQALVAEIIISFLLMFVISGVATDSRATGE------LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGR 227          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: GLPF_HAEIN (Glycerol uptake facilitator protein OS=Haemophilus influenzae GN=glpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.916e-11
Identity = 56/204 (27.45%), Postives = 88/204 (43.14%), Query Frame = 1
Query:  115 IAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGF---------------EGSKNYERLGGGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLG 678
            I EF+ T L ++  V  V  +  +    ++ G+  I+  +G  +   VY TAG+SG H+NPAVT  L         + + Y++ Q LGA   A +V                   G++    L G  +   H   + G     E + T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR  G
Sbjct:   10 IGEFLGTALLIFFGVGCVAALKVAG---ASFGLWEISIMWGMGVALAVYATAGLSGAHLNPAVTIALWKFACFDGKKVIPYIISQMLGAFFAAALVYALYRNVFIDYETVHNIVRGTQESLSLAGTFSTYPHPSLSIGGAFAVEFVITAILMALIMALTDDGNGVPRGP---LAPLLIGILIAVIGGAMGPLTGFAMNPARDFG 207          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.916e-11
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   91 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV 402
            S +F RA  AEF+AT +F++  + + +     N + S   +  IA AFG  I  LV     ISG HINPAVT   L+   +S  RA FY+  Q LGAV GA ++
Sbjct:    1 SIAFSRAVFAEFLATLIFVFFGLGSAL-----NWQQSLPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: NIP21_ARATH (Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.114e-11
Identity = 70/261 (26.82%), Postives = 114/261 (43.68%), Query Frame = 1
Query:   19 TSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGA---EIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWG--*PLDLSGLDPFIGAALAAVYHQIV 786
            TS  S+K     PP        L S  F +  +AE + T+  ++     +   ++ N     V + GIA  +G +I  LVYC   +S  H NPAVT  L  +++  L +   Y+ +Q +G+   +  ++      N +      +V       G  L A   E I T  L+  V + T  KR   +     L  L IG  V L  +    ++G  +NPARS+G A++      WG    + +  L P +GA   A+ H+++
Sbjct:   27 TSLPSNKHESSSPP--------LLSVHFLQKLLAELVGTYYLIFAGCAAIAVNAQHN---HVVTLVGIAVVWGIVIMVLVYCLGHLSA-HFNPAVTLALASSQRFPLNQVPAYITVQVIGSTLASATLR-LLFDLNNDVCSKKHDVFLGSSPSGSDLQAFVMEFIITGFLMLVVCAVTTTKRTTEE-----LEGLIIGATVTLNVIFAGEVSGASMNPARSIGPALV------WGCYKGIWIYLLAPTLGAVSGALIHKML 263          
The following BLAST results are available for this feature:
BLAST of DC900399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQPM_ARCFU6.041e-1230.85Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
NIP11_MAIZE7.890e-1228.28Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
GLPF_STRR61.030e-1128.63Glycerol uptake facilitator protein OS=Streptococc... [more]
AQP9_MOUSE1.346e-1126.61Aquaporin-9 OS=Mus musculus GN=Aqp9 PE=2 SV=1[more]
NIP33_ORYSJ1.758e-1131.41Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica G... [more]
AQP9_RAT2.998e-1126.61Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1[more]
NIP42_ARATH3.916e-1127.80Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
GLPF_HAEIN3.916e-1127.45Glycerol uptake facilitator protein OS=Haemophilus... [more]
AQP2_TALEU3.916e-1141.35Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]
NIP21_ARATH5.114e-1126.82Aquaporin NIP2-1 OS=Arabidopsis thaliana GN=NIP2-1... [more]

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Properties
Property NameValue
Genbank descriptionDC900399 VSS Citrus sinensis cDNA clone VS28973 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900399 ID=DC900399; Name=DC900399; organism=Citrus sinensis; type=EST; length=998bp
GAGAGGCAACCCATTGGGACATCAGCTCAATCAGACAAAGACTACAAGGA
GCCACCACCAGCACCTTTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCTT
TTTACAGAGCTGGTATTGCAGAGTTCATGGCTACCTTCTTGTTCCTCTAC
ATCACTGTCTTGACTGTCATGGGTGTCTCTAAGTCTAACACCAAGTGCTC
CACTGTCGGTATCCAAGGAATTGCTTGGGCCTTTGGTGGCATGATCTTTG
CGCTTGTTTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCA
GTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTTTCCCTGACAAGGGCTGT
CTTCTACATGGTCATGCAGTGCCTTGGTGCTGTCTGTGGTGCTGGTGTTG
TCAAGGGATTCGAAGGTTCAAAGAACTACGAGAGGTTGGGTGGTGGAGCC
AATGTTGTTGCTCACGGCTACACCAAGGGTGATGGTCTTGGTGCTGAGAT
TATTGGAACCTTTGTTCTTGTTTACACTGTCTTCTCTGCCACTGATGCGA
AGAGAAACGCCAGAGACTCTCATGTCCCTATTTTGGCCCCCCTCCCCATT
GGATTTGCTGTTTTCTTGGTCCACCTGGCCACCATCCCCATCACAGGAAC
TGGCATCAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTCAACAAAG
ACCATGCCTGGGGATGACCATTGGATCTTTCTGGGTTGGACCCATTCATT
GGAGCTGCACTGGCTGCTGTGTACCACCAGATAGTCATCAGGGCCATTCC
CTTCAAGTCCAGGGCTTAAAAAAGTTCACTGATGGANCNTTTTTTTTTTT
AATTTGGATCTTCTTTGTCGGGTCTTTTTGTTTATGNGCATTTGGTGTTT
AACTGTTTAAAATGTTAATTAATTGTGTGTAAATTATCTAGCATTGCTGA
ATTTTTTTTTTTTTAAGCTTTTGATTGGAGGATTCATTTTTTAGTCTT
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