DC900399

Overview
NameDC900399
Unique NameDC900399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:125..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.114e-11
Identity = 66/234 (28.21%), Postives = 104/234 (44.44%), Query Frame = 1
Query:  121 EFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYT------KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI------IFNK-----DHAWG*PLDLSGLDPFIGAALAAV 771
            EF+ T + + +    V GV    TK ++ G   I   +G  +   V+ +  +S  ++NPAVT G+ L   L     + Y++ Q  GA+ G  ++   +   +YE      N++A   T          L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR LG  I      I NK      +AW     +  + P IGAALA +
Sbjct:    8 EFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQ-ILVWLQFKPHYEAEENAGNILATFSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAW-----IPVVGPVIGAALAVL 229          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.679e-11
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   91 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV 402
            S +F RA ++EF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT   L+   +S  RA+FY+  Q LGAV GA ++
Sbjct:    1 SIAFSRAVLSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALL 99          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP2_HORSE (Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.679e-11
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   91 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV 402
            S +F RA +AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     +SG HINPAVT   L+   +S  RA FY+  Q LGAV GA ++
Sbjct:    1 SIAFSRAVLAEFLATLLFVFFGLGSAL-----NWPQAMPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 54/193 (27.98%), Postives = 86/193 (44.56%), Query Frame = 1
Query:  115 IAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 690
            IAE + T    Y  +    G    N    +V   GI   +G ++  +VY    ISG H NPAVT    +  +    +   Y++ Q +G++  +G +            G     V  G + G  L  EII +F+L++ +   ATD      D  +  +A + +G  + L      PI+G  +NPARS+G AI+
Sbjct:   46 IAEAIGT----YFVIFAGCGSVAVNKIYGSVTFPGICVTWGLIVMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFG----TVPVG-SNGQSLAIEIIISFLLMFVISGVATD------DRAIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIV 223          
BLAST of DC900399 vs. ExPASy Swiss-Prot
Match: AQP2_DUGDU (Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   91 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV 402
            S +F RA  +EF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT   L+   +S  RA FY+  Q LGAV GA ++
Sbjct:    1 SIAFSRAVFSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRATFYLAAQLLGAVAGAAIL 99          
The following BLAST results are available for this feature:
BLAST of DC900399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
GLPF_STRPN5.114e-1128.21Glycerol uptake facilitator protein OS=Streptococc... [more]
AQP2_PROHA6.679e-1140.38Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]
AQP2_HORSE6.679e-1140.38Aquaporin-2 (Fragment) OS=Equus caballus GN=AQP2 P... [more]
NIP1_NICAL8.723e-1127.98Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
AQP2_DUGDU8.723e-1140.38Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionDC900399 VSS Citrus sinensis cDNA clone VS28973 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900399 ID=DC900399; Name=DC900399; organism=Citrus sinensis; type=EST; length=998bp
GAGAGGCAACCCATTGGGACATCAGCTCAATCAGACAAAGACTACAAGGA
GCCACCACCAGCACCTTTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCTT
TTTACAGAGCTGGTATTGCAGAGTTCATGGCTACCTTCTTGTTCCTCTAC
ATCACTGTCTTGACTGTCATGGGTGTCTCTAAGTCTAACACCAAGTGCTC
CACTGTCGGTATCCAAGGAATTGCTTGGGCCTTTGGTGGCATGATCTTTG
CGCTTGTTTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCA
GTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTTTCCCTGACAAGGGCTGT
CTTCTACATGGTCATGCAGTGCCTTGGTGCTGTCTGTGGTGCTGGTGTTG
TCAAGGGATTCGAAGGTTCAAAGAACTACGAGAGGTTGGGTGGTGGAGCC
AATGTTGTTGCTCACGGCTACACCAAGGGTGATGGTCTTGGTGCTGAGAT
TATTGGAACCTTTGTTCTTGTTTACACTGTCTTCTCTGCCACTGATGCGA
AGAGAAACGCCAGAGACTCTCATGTCCCTATTTTGGCCCCCCTCCCCATT
GGATTTGCTGTTTTCTTGGTCCACCTGGCCACCATCCCCATCACAGGAAC
TGGCATCAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTCAACAAAG
ACCATGCCTGGGGATGACCATTGGATCTTTCTGGGTTGGACCCATTCATT
GGAGCTGCACTGGCTGCTGTGTACCACCAGATAGTCATCAGGGCCATTCC
CTTCAAGTCCAGGGCTTAAAAAAGTTCACTGATGGANCNTTTTTTTTTTT
AATTTGGATCTTCTTTGTCGGGTCTTTTTGTTTATGNGCATTTGGTGTTT
AACTGTTTAAAATGTTAATTAATTGTGTGTAAATTATCTAGCATTGCTGA
ATTTTTTTTTTTTTAAGCTTTTGATTGGAGGATTCATTTTTTAGTCTT
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