DC900398

Overview
NameDC900398
Unique NameDC900398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: NLK_CAEEL (Serine/threonine kinase NLK OS=Caenorhabditis elegans GN=lit-1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 87/205 (42.44%), Postives = 119/205 (58.05%), Query Frame = 2
Query:    2 KIVALKKVR--FDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSC---SLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            K VALKK+   F NL   S K + REI +L    H NV+ L  ++          LY++   M+ DL  ++ SP+   T   VK +++Q+L GL++ H   +LHRDIK  NLL++ + +LKI DFGLA  +D   +  MT  VVT +YR PELL+GA  Y   VD+WS GCI AELL  K +      +EQL  I  L G+PS+E
Sbjct:  264 KRVALKKMPNVFQNLA--SCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQSDLHKIIVSPQA-LTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQE 465          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MPK3_ARATH (Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KIVALKKVR--FDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTS---RMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            ++VA+KK+   FDN      K   REI +LR LDH N+I +  +V     R    +Y+    M+ DL  ++ S +   +E   + +++QLL GL++ H+  ++HRD+K SNLL++ +  LKI DFGLA     N    MT  VVT WYR PELLL ++DY   +D+WS GCI  EL+  KP+ PG+  V Q+  + +L G+P+E
Sbjct:   62 ELVAMKKIANAFDN--HMDAKRTLREIKLLRHLDHENIIAIRDVVPPPLRRQFSDVYISTELMDTDLHQIIRSNQ-SLSEEHCQYFLYQLLRGLKYIHSANIIHRDLKPSNLLLNANCDLKICDFGLARPTSENDF--MTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRKPLFPGKDHVHQMRLLTELLGTPTE 260          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK01_XENLA (Mitogen-activated protein kinase 1 OS=Xenopus laevis GN=mapk1 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 76/183 (41.53%), Postives = 113/183 (61.75%), Query Frame = 2
Query:   68 REILILRRLDHPNVIKLEGLV---TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            REI IL R  H N+I +  ++   T      +Y+V   ME DL  L+ +  +  +   +  +++Q+L GL++ H+  VLHRD+K SNLL++    LKI DFGLA   DP+H H   +T  V T WYR PE++L +  Y   +D+WS GCILAE+L+ +PI PG+  ++QL+ I  + GSPS+E
Sbjct:   73 REIKILLRFKHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHL--SNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 253          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 89/215 (41.40%), Postives = 123/215 (57.21%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHP-NVIKL--------EGLVTSRMSCSLYLVFHYMEHDLAGLVAS----PEVKFTEP-QVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLL-IDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            K+VALKK R +  E        REI +L+ L     V++L            +     +LYLVF Y++ DL   + S    P  K  EP  ++  M QL  G+ HCH++GVLHRD+K  NLL + D  +LKIAD GL   F    K   T  +VTLWYR PE+LLG+T Y  GVD+WS GCI AE++  + + PG +E +QL  I++L G+P+E+
Sbjct:   28 KLVALKKTRLEMDEEGIPPTALREISLLQMLSTSIYVVRLLCVEHVHQPSTKSQSTKSNLYLVFEYLDTDLKKFIDSYRKGPNPKPLEPFLIQKLMFQLCKGVAHCHSHGVLHRDLKPQNLLLVKDKELLKIADLGLGRAFTVPLKS-YTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEQ 241          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDKE1_ARATH (Cyclin-dependent kinase E-1 OS=Arabidopsis thaliana GN=CDKE-1 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 85/218 (38.99%), Postives = 127/218 (58.26%), Query Frame = 2
Query:    8 VALKKVRF----DNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEP----QVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLI----DDDGVLKIADFGLASFFDPNHKHPMTSR--VVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRT--------EVEQLHKIYKLCGSPS 595
            +A+KK +     D + P ++    REI++LR + H NV+KL  +  +    SLYL F Y E+DL  ++     K         VK  + QLL+GL + H+N ++HRD+K SN+L+    ++ G++KIADFGLA  +    K P++    VVT+WYR PELLLG+  Y   VD+W+ GCI AELL  KP+  G          +++QL KI+K+ G P+
Sbjct:   52 IAIKKFKQSKDGDGVSPTAI----REIMLLREISHENVVKLVNVHINFADMSLYLAFDYAEYDLYEIIRHHRDKVGHSLNTYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGDAEEHGIVKIADFGLARIYQAPLK-PLSDNGVVVTIWYRAPELLLGSKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSSQNPFQLDQLDKIFKILGHPT 264          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDK6_MOUSE (Cell division protein kinase 6 OS=Mus musculus GN=Cdk6 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 85/207 (41.06%), Postives = 120/207 (57.97%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLD---HPNVIKLEGLVT---SRMSCSLYLVFHYMEHDLAGLVAS-PEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            + VALK+VR    E        RE+ +LR L+   HPNV++L  + T   +     L LVF +++ DL   +   PE       +K  M QLL GL+  H++ V+HRD+K  N+L+   G +K+ADFGLA  +  + +  +TS VVTLWYR PE+LL  + Y   VDLWS GCI AE+   KP+  G ++V+QL KI  + G P EE
Sbjct:   38 RFVALKRVRVQTSEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY--SFQMALTSVVVTLWYRAPEVLL-QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDIIGLPGEE 241          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CC2H2_TRYBB (Cell division control protein 2 homolog 2 OS=Trypanosoma brucei brucei GN=CRK2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 81/203 (39.90%), Postives = 118/203 (58.13%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLID-DDGVLKIADFGLASFFDPNHKHPM---TSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            + VA+K++     +        RE+ +LR L+HP V++L  +V       L L+F YME DL G++      F   +++  M QLL GL  CH+   +HRDIK SN+LID  + V+K+ADFGL   F    + P+   T+ V+TLWYR PE+LLG   Y   VD+WS GC+ AEL   + +  G T + QL  I++L G+P+E
Sbjct:   70 RTVAMKRIPLIVNDGGVPSTAVREVSLLRELNHPYVVRLLDVVLHE--AKLLLIFEYMEQDLQGMLKQRNTAFVGGKLRRIMFQLLLGLHECHSRRFVHRDIKPSNILIDRKESVVKLADFGLGRAF----RVPLQTYTTEVMTLWYRAPEVLLGDKQYLPAVDVWSMGCVFAELARRRSLFAGDTAINQLFSIFQLLGTPTE 266          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: NTF4_TOBAC (Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 81/202 (40.10%), Postives = 121/202 (59.90%), Query Frame = 2
Query:    8 VALKKVR--FDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS---LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            VA+KK+   FDN      K   REI +LR +DH N++ +  ++      +   +Y+ +  M+ DL  ++ S +   +E   + +++Q+L GL++ H+  VLHRD+K SNLL++ +  LKI DFGLA     +    MT  VVT WYR PELLL ++DY   +D+WS GCI  EL+  KP+ PGR  V QL  + +L G+PSE
Sbjct:   86 VAIKKIANAFDN--KIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQREAFNDVYIAYELMDTDLHQIIRSNQ-GLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARV--TSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSE 282          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK04_MOUSE (Mitogen-activated protein kinase 4 OS=Mus musculus GN=Mapk4 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 84/200 (42.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMS---------CSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLID-DDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKI 571
            VA+KK+     +  S+K   REI I+RRLDH N++K+  ++  + S            Y+V  YME DLA L+    +  TE   K +M+QLL GL++ H+  VLHRD+K +N+ I  +D VLKI DFGLA   D ++ H   ++  +VT WYR P LLL   +Y   +D+W+AGCILAE+L GK +  G  E+EQ+  I
Sbjct:   46 VAVKKIVLS--DARSMKHALREIKIIRRLDHDNIVKVYEVLGPKGSDLQGELFKFSVAYIVQEYMETDLACLLEQGTL--TEDHAKLFMYQLLRGLKYIHSANVLHRDLKPANIFISTEDLVLKIGDFGLARIVDQHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCILAEMLTGKMLFAGAHELEQMQLI 241          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK01_RAT (Mitogen-activated protein kinase 1 OS=Rattus norvegicus GN=Mapk1 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 76/183 (41.53%), Postives = 113/183 (61.75%), Query Frame = 2
Query:   68 REILILRRLDHPNVIKLEGLV---TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            REI IL R  H N+I +  ++   T      +Y+V   ME DL  L+ +  +  +   +  +++Q+L GL++ H+  VLHRD+K SNLL++    LKI DFGLA   DP+H H   +T  V T WYR PE++L +  Y   +D+WS GCILAE+L+ +PI PG+  ++QL+ I  + GSPS+E
Sbjct:   68 REIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHL--SNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 248          
The following BLAST results are available for this feature:
BLAST of DC900398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NLK_CAEEL5.310e-3442.44Serine/threonine kinase NLK OS=Caenorhabditis eleg... [more]
MPK3_ARATH5.310e-3440.20Mitogen-activated protein kinase 3 OS=Arabidopsis ... [more]
MK01_XENLA5.310e-3441.53Mitogen-activated protein kinase 1 OS=Xenopus laev... [more]
CKB11_ARATH5.310e-3441.40Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CDKE1_ARATH5.310e-3438.99Cyclin-dependent kinase E-1 OS=Arabidopsis thalian... [more]
CDK6_MOUSE5.310e-3441.06Cell division protein kinase 6 OS=Mus musculus GN=... [more]
CC2H2_TRYBB5.310e-3439.90Cell division control protein 2 homolog 2 OS=Trypa... [more]
NTF4_TOBAC6.936e-3440.10Mitogen-activated protein kinase homolog NTF4 OS=N... [more]
MK04_MOUSE6.936e-3442.00Mitogen-activated protein kinase 4 OS=Mus musculus... [more]
MK01_RAT6.936e-3441.53Mitogen-activated protein kinase 1 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionDC900398 VSS Citrus sinensis cDNA clone VS28972 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900398 ID=DC900398; Name=DC900398; organism=Citrus sinensis; type=EST; length=602bp
CAAAATCGTAGCACTAAAGAAAGTACGGTTTGACAATTTGGAACCTGAGA
GTGTGAAATTTATGGCTAGAGAGATTCTCATATTGCGGAGATTGGATCAT
CCAAATGTTATAAAGTTGGAAGGTTTAGTGACGTCAAGGATGTCATGTAG
TTTGTACCTGGTATTTCATTATATGGAGCATGATTTGGCTGGACTTGTTG
CAAGCCCTGAAGTGAAGTTCACAGAACCACAGGTTAAATGTTACATGCAT
CAACTGCTATCTGGACTTGAGCACTGTCACAACAATGGTGTGCTTCACCG
GGACATTAAAGGCTCTAATCTTCTAATTGATGATGATGGAGTGCTTAAAA
TAGCTGATTTTGGTTTGGCATCTTTCTTTGATCCAAATCATAAGCATCCT
ATGACTAGTCGAGTGGTTACTCTTTGGTATCGACCTCCTGAGCTGCTTCT
GGGGGCTACTGATTACGGTGTGGGTGTTGATCTATGGAGCGCAGGTTGTA
TTTTAGCTGAGCTACTGGCTGGGAAGCCCATTATGCCTGGTCGTACGGAG
GTAGAGCAACTACATAAGATATATAAGTTATGTGGTTCCCCTTCAGAAGA
AT
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