DC900398

Overview
NameDC900398
Unique NameDC900398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4027 contig Csv1_Contig4027:505..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK01_MOUSE (Mitogen-activated protein kinase 1 OS=Mus musculus GN=Mapk1 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 76/183 (41.53%), Postives = 113/183 (61.75%), Query Frame = 2
Query:   68 REILILRRLDHPNVIKLEGLV---TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            REI IL R  H N+I +  ++   T      +Y+V   ME DL  L+ +  +  +   +  +++Q+L GL++ H+  VLHRD+K SNLL++    LKI DFGLA   DP+H H   +T  V T WYR PE++L +  Y   +D+WS GCILAE+L+ +PI PG+  ++QL+ I  + GSPS+E
Sbjct:   68 REIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHL--SNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 248          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK01_HUMAN (Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 76/183 (41.53%), Postives = 113/183 (61.75%), Query Frame = 2
Query:   68 REILILRRLDHPNVIKLEGLV---TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            REI IL R  H N+I +  ++   T      +Y+V   ME DL  L+ +  +  +   +  +++Q+L GL++ H+  VLHRD+K SNLL++    LKI DFGLA   DP+H H   +T  V T WYR PE++L +  Y   +D+WS GCILAE+L+ +PI PG+  ++QL+ I  + GSPS+E
Sbjct:   70 REIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHL--SNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 250          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK01_BOVIN (Mitogen-activated protein kinase 1 OS=Bos taurus GN=MAPK1 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 76/183 (41.53%), Postives = 113/183 (61.75%), Query Frame = 2
Query:   68 REILILRRLDHPNVIKLEGLV---TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            REI IL R  H N+I +  ++   T      +Y+V   ME DL  L+ +  +  +   +  +++Q+L GL++ H+  VLHRD+K SNLL++    LKI DFGLA   DP+H H   +T  V T WYR PE++L +  Y   +D+WS GCILAE+L+ +PI PG+  ++QL+ I  + GSPS+E
Sbjct:   70 REIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHL--SNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 250          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MPK1_ORYSJ (Mitogen-activated protein kinase 1 OS=Oryza sativa subsp. japonica GN=MPK1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.058e-34
Identity = 80/202 (39.60%), Postives = 121/202 (59.90%), Query Frame = 2
Query:    8 VALKKVR--FDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS---LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            VA+KK+   FDN      K   REI +LR +DH N++ +  ++      S   +Y+ +  M+ DL  ++ S +   +E   + +++Q+L GL++ H+  VLHRD+K SNLL++ +  LKI DFGLA     +    MT  VVT WYR PELLL +++Y   +D+WS GCI  EL+  KP+ PGR  V QL  + +L G+P+E
Sbjct:   93 VAIKKIANAFDN--KIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQRNSFNDVYIAYELMDTDLHQIIRSNQA-LSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLAR--TTSETDFMTEYVVTRWYRAPELLLNSSEYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPNE 289          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK04_RAT (Mitogen-activated protein kinase 4 (Fragment) OS=Rattus norvegicus GN=Mapk4 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.058e-34
Identity = 84/200 (42.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMS---------CSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLID-DDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKI 571
            VA+KK+     +  S+K   REI I+RRLDH N++K+  ++  + S            Y+V  YME DLA L+    +  TE   K +M+QLL GL++ H+  VLHRD+K +N+ I  +D VLKI DFGLA   D ++ H   ++  +VT WYR P LLL   +Y   +D+W+AGCILAE+L GK +  G  E+EQ+  I
Sbjct:   20 VAVKKIVLS--DARSMKHALREIKIIRRLDHDNIVKVYEVLGPKGSDLQGELFKFSVAYIVQEYMETDLACLLEQGTL--TEEHAKLFMYQLLRGLKYIHSANVLHRDLKPANIFISTEDLVLKIGDFGLARIADQHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCILAEMLTGKMLFAGAHELEQMQLI 215          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: NTF6_TOBAC (Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum GN=NTF6 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.183e-33
Identity = 81/200 (40.50%), Postives = 117/200 (58.50%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTS---RMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            VA+KK+          K   REI +L  +DH N+IK++ +V          +Y+V+  M+ DL  ++ S +   T+   + +++QLL GL++ H+  VLHRD+K SNLL++ +  LKI DFGLA     +    MT  VVT WYR PELLL  T+Y   +D+WS GCIL EL+  +P+ PGR   +QL  I  L GSP +
Sbjct:   64 VAIKKIGNAFENRIDAKRTLREIKLLSHMDHENIIKIKDIVRPPDREEFNDVYIVYELMDTDLHQIIRSSQA-LTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKICDFGLAR--TTSEADFMTEYVVTRWYRAPELLLNCTEYTAAIDIWSVGCILMELIKREPLFPGRDYAQQLGLIIALLGSPED 260          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MMK2_MEDSA (Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.183e-33
Identity = 82/202 (40.59%), Postives = 121/202 (59.90%), Query Frame = 2
Query:    8 VALKKV--RFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS---LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            VA+KK+   FDN      K   REI +LR +DH NV+ ++ ++      +   +Y+V   M+ DL  ++ S +   T+   + +++QLL GL++ H+  VLHRD+K SNLL++ +  LKI DFGLA     +    MT  VVT WYR PELLL  +DY   +D+WS GCIL E++  +P+ PGR  V QL  + +L GSP +
Sbjct:   63 VAIKKIGNAFDNRI--DAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNHVYIVSELMDTDLHQIIRSNQ-PMTDDHCRYFVYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLAR--TTSETDFMTEYVVTRWYRAPELLLNCSDYTAAIDIWSVGCILGEIVTRQPLFPGRDYVHQLRLVTELIGSPDD 259          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDK6_HUMAN (Cell division protein kinase 6 OS=Homo sapiens GN=CDK6 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.183e-33
Identity = 85/207 (41.06%), Postives = 120/207 (57.97%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLD---HPNVIKLEGLVT---SRMSCSLYLVFHYMEHDLAGLVAS-PEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            + VALK+VR    E        RE+ +LR L+   HPNV++L  + T   +     L LVF +++ DL   +   PE       +K  M QLL GL+  H++ V+HRD+K  N+L+   G +K+ADFGLA  +  + +  +TS VVTLWYR PE+LL  + Y   VDLWS GCI AE+   KP+  G ++V+QL KI  + G P EE
Sbjct:   38 RFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY--SFQMALTSVVVTLWYRAPEVLL-QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE 241          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: GSK3A_HUMAN (Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 87/208 (41.83%), Postives = 121/208 (58.17%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTS----RMSCSLYLVFHYMEHDLAGLVAS-PEVKFTEP--QVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDD-GVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            ++VA+KKV  D       +F  RE+ I+R+LDH N+++L     S    +    L LV  Y+   +  +     + K T P   VK YM+QL   L + H+ GV HRDIK  NLL+D D  VLK+ DFG A         P  S + + +YR PEL+ GATDY   +D+WSAGC+LAELL G+PI PG + V+QL +I K+ G+P+ E
Sbjct:  143 ELVAIKKVLQDK------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLVLEYVPETVYRVARHFTKAKLTIPILYVKVYMYQLFRSLAYIHSQGVCHRDIKPQNLLVDPDTAVLKLCDFGSAKQLVRGE--PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTRE 342          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: ERK2_DICDI (Extracellular signal-regulated kinase 2 OS=Dictyostelium discoideum GN=erkB PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 88/206 (42.72%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    8 VALKKV--RFDNLEPESVKFMAREILILRRLD-HPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLA----SFFDPNHKHP-MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VALKK+   F N       F  REI+ L+ L  H N+IKL  ++ +     +YLVF +ME DL  ++ +  ++    Q   Y  QLL  L++ H+  VLHRDIK SNLL++ + ++K+ADFGLA    S       +P +T  V T WYR PE+LLG+T Y  GVD+WS GCIL ELL  K + PG + + QL  I ++ G PS E
Sbjct:   40 VALKKIFDAFQNATDAQRTF--REIMFLQELHGHENIIKLLNVIKADNDRDIYLVFEHMETDLHAVIRAKILEEIHKQYTIY--QLLKALKYMHSANVLHRDIKPSNLLLNSECLVKVADFGLARSITSLESIAEANPVLTEYVATRWYRAPEILLGSTKYTKGVDMWSIGCILGELLGEKAMFPGNSTMNQLDLIIEVTGRPSAE 241          
The following BLAST results are available for this feature:
BLAST of DC900398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MK01_MOUSE6.936e-3441.53Mitogen-activated protein kinase 1 OS=Mus musculus... [more]
MK01_HUMAN6.936e-3441.53Mitogen-activated protein kinase 1 OS=Homo sapiens... [more]
MK01_BOVIN6.936e-3441.53Mitogen-activated protein kinase 1 OS=Bos taurus G... [more]
MPK1_ORYSJ9.058e-3439.60Mitogen-activated protein kinase 1 OS=Oryza sativa... [more]
MK04_RAT9.058e-3442.00Mitogen-activated protein kinase 4 (Fragment) OS=R... [more]
NTF6_TOBAC1.183e-3340.50Mitogen-activated protein kinase homolog NTF6 OS=N... [more]
MMK2_MEDSA1.183e-3340.59Mitogen-activated protein kinase homolog MMK2 OS=M... [more]
CDK6_HUMAN1.183e-3341.06Cell division protein kinase 6 OS=Homo sapiens GN=... [more]
GSK3A_HUMAN1.545e-3341.83Glycogen synthase kinase-3 alpha OS=Homo sapiens G... [more]
ERK2_DICDI1.545e-3342.72Extracellular signal-regulated kinase 2 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionDC900398 VSS Citrus sinensis cDNA clone VS28972 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900398 ID=DC900398; Name=DC900398; organism=Citrus sinensis; type=EST; length=602bp
CAAAATCGTAGCACTAAAGAAAGTACGGTTTGACAATTTGGAACCTGAGA
GTGTGAAATTTATGGCTAGAGAGATTCTCATATTGCGGAGATTGGATCAT
CCAAATGTTATAAAGTTGGAAGGTTTAGTGACGTCAAGGATGTCATGTAG
TTTGTACCTGGTATTTCATTATATGGAGCATGATTTGGCTGGACTTGTTG
CAAGCCCTGAAGTGAAGTTCACAGAACCACAGGTTAAATGTTACATGCAT
CAACTGCTATCTGGACTTGAGCACTGTCACAACAATGGTGTGCTTCACCG
GGACATTAAAGGCTCTAATCTTCTAATTGATGATGATGGAGTGCTTAAAA
TAGCTGATTTTGGTTTGGCATCTTTCTTTGATCCAAATCATAAGCATCCT
ATGACTAGTCGAGTGGTTACTCTTTGGTATCGACCTCCTGAGCTGCTTCT
GGGGGCTACTGATTACGGTGTGGGTGTTGATCTATGGAGCGCAGGTTGTA
TTTTAGCTGAGCTACTGGCTGGGAAGCCCATTATGCCTGGTCGTACGGAG
GTAGAGCAACTACATAAGATATATAAGTTATGTGGTTCCCCTTCAGAAGA
AT
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