CX043843

Overview
NameCX043843
Unique NameCX043843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.113e-17
Identity = 58/201 (28.86%), Postives = 97/201 (48.26%), Query Frame = 1
Query:  193 IPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWAD--LFSMMTLPVHLRKPHLFPKLPPSLRE---TLEVYSMELKTLAENLISKMGEVLNIKDEEM------REFFENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            +PV+DM+   + E++           ++WG F L  HG+    L +++  + G F L   EK +  +RPGD  G+G   + S   K  W++   FS   L   LRK  L+PK     R     +E +  E++ LA+ L+      L +  E++      ++  E     M +N+YP CP P++ +GL  H+D+   T +LQ
Sbjct:   49 VPVVDMRDPCAAEAVA-------LAAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRK--LWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ 240          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.113e-17
Identity = 54/195 (27.69%), Postives = 99/195 (50.77%), Query Frame = 1
Query:  196 PVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEK-KKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQGM-----RMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            PVI+M+ L   +   + +A L   C+ WG ++L+NHG+S   + +++   +  +    E++ K++  +  D           E + LDW   F +  LP         P L    R T++ +++EL+ LAE L+  + E L ++   +++ F  G  G+     +++ YPPCP+PE + GL  H+DA  + +L Q
Sbjct:    7 PVINMELLQGSQR-PAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEFASKTLD------TVENVEPENLDWESTFFLRHLPTS--NISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQ 192          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.372e-17
Identity = 58/204 (28.43%), Postives = 95/204 (46.57%), Query Frame = 1
Query:  175 DTLISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFF-------ENGLQG-MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            +T    IPVI +       S   E   L   C+EWG F + +HG+S + L  +  +++  F+L M  K    + P +  G+G   +     KL W++ FS+M   +      L+P         +E Y   +  L+  LIS +   L +  E++            + +Q  +++N YP CP P   MGL+PH+D++ LTIL Q
Sbjct:   41 ETTSGPIPVISL-------SNPEEHGLLRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQ 237          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.016e-17
Identity = 54/199 (27.14%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  184 ISQIPVIDMQSLHSEESMDSELA--KLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDM-EGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFF--ENGLQ-GMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            I   P+IDM+ L++   ++  L   ++   C  WGFFQ+VNH +S   ++K+++  +  +    E+K K      DM +  G     S+   +DW   F +   P         P L    R+ ++ ++ +++ L+E L+  + E L ++   ++  F   NG   G +++ YPPCP+P+ + GL  H+DA  + +L Q
Sbjct:    4 IVNFPIIDMEKLNNYNGVERSLVLDQIKDACHNWGFFQVVNHSLSHELMDKVERMTKEHYKKFREQKFK------DMVQTKGLVSAESQVNDIDWESTFYLRHRPTSNISE--VPDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQ 194          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.016e-17
Identity = 50/192 (26.04%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  196 PVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFF---ENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            P+I++++++ ++     L +++  C+ WGFF+LVNHG+   FL+ ++K     +   MEE+ K       +E        +E   +DW   F +  LP           L    ++ ++ ++ +L+ LAE L+  + E L ++   +++ F   +    G +++ YPPCP+P+ + GL  H+DA  + +L Q
Sbjct:    5 PIINLENIN-DDGRAKILEQIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSKGLEA-----AQAEVNDMDWESTFFLRHLPE--SNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQ 188          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.197e-16
Identity = 53/198 (26.77%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  184 ISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQGM-----RMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            +   PVI+M+ L  +E   + +  ++  C+ WGFF+LVNH +    ++++++  +  +   ME++ K       +EG      V +   +DW   F +  LPV        P L    R+ ++ ++ +L+ LAE ++  + E L ++   ++  F     G+     +++ YPPCP+PE   GL  H+DA  L +L Q
Sbjct:    1 MDSFPVINMEKLEGQERA-ATMKLINDACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELMA-SKVEG-----AVVDANDMDWESTFFIRHLPVSNLSE--IPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQ 189          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.197e-16
Identity = 54/195 (27.69%), Postives = 98/195 (50.26%), Query Frame = 1
Query:  196 PVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEK-KKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQGM-----RMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            PVI+M+ L   +   + +A L   C+ WGFF+L+NHG+S   + +++   +  +    E++ K++  +  D      +    +   LDW   F +  LP         P L    R T++ ++ EL+ LAE L+  + E L ++   ++  F  G  G+     +++ YPPCP+P+ + GL  H+DA  + +L Q
Sbjct:    7 PVINMELLQGSQR-PAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEFASKTLD------SVENVDPDNLDWESTFFLRHLPTS--NISQIPDLDDDCRATMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQ 192          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.563e-16
Identity = 57/251 (22.71%), Postives = 109/251 (43.43%), Query Frame = 1
Query:   91 VQELVKNPALVVPDRYIRPDQDSPLISD----------DTLISQIPVID----MQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRP--GDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLIS--KMGEVLNIKDEEMREFF----------ENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILL 759
            V+ L  +    +P  Y+RP  +   + D          D    +IPV+D    + S   ++  D  +  +     +WG   +  HG+    +++L+     FF L +++K+ Y   P  G ++G+G     +   + +W D    +  P  L    L+P  PP        +    + LA  L++   MG +   + + + +            ++ L  +++NYYP CPQPE  +G+  H+D +AL+ +L
Sbjct:   14 VEALSLSGLSAIPPEYVRPADERAGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAHTDVSALSFIL 264          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 58/201 (28.86%), Postives = 95/201 (47.26%), Query Frame = 1
Query:  193 IPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWAD--LFSMMTLPVHLRKPHLFPKLPPSLRE---TLEVYSMELKTLAENLISKMGEVLNIKDEEM------REFFENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            +PV+DM+   + E++           ++WG F L  HG+    L  ++  + G F L   EK +  +RPGD  G+G   + S   K  W++   FS   L   LRK  L+PK     R     +E +  E++ LA+ L+      L +  E++       +  E     M +N+YP CP P++ +GL  H+D+   T +LQ
Sbjct:   49 VPVVDMRDPCAAEAVA-------LAAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRK--LWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ 240          
BLAST of CX043843 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.548e-16
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 1
Query:  124 VPDRYIRPDQDSPLIS----DDTLISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVH-LRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEE-----MREFFENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQ 762
            +PD Y    +D  L S           IP+ID+   H + +      ++   C+ WG FQ+ NHG+    L+ ++      F L ++ K K  +    + G+G A + S   K  W++ F++   P++  RK  L+P+   +  + +E Y   +K LA  L+      L + +E+     +          +++N+YP CP+P++ MGL+ H+D+  LTIL Q
Sbjct:   30 LPDSYKWTPKDDLLFSAAPSPPATGENIPLIDLD--HPDATN-----QIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGFTITGSPLNDFRK--LWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQ 243          
The following BLAST results are available for this feature:
BLAST of CX043843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
G3O22_WHEAT4.113e-1728.86Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
ACCO1_DORSP4.113e-1727.691-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
G3OX3_ARATH5.372e-1728.43Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ACCO_DIACA7.016e-1727.14Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCO1_CUCME7.016e-1726.041-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO_PERAE1.197e-1626.771-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO2_DORSP1.197e-1627.691-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
LDOX_MAIZE1.563e-1622.71Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G3O21_WHEAT2.041e-1628.86Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
G3OX1_ARATH4.548e-1626.91Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13G06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13G06-N11-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043843 ID=CX043843; Name=CX043843; organism=Citrus sinensis; type=EST; length=764bp
TTCCAAAATCAATACAAAGCTGCAGCAATCTTGAAAGGATTTGAGGAACA
AAAGATGGCCCAGATTGGAAGTTCTCTCCTTGTGCCTTGTGTTCAAGAGT
TGGTCAAGAATCCGGCGTTAGTTGTCCCCGACAGATACATACGTCCAGAT
CAAGATTCACCCCTCATTTCTGATGATACTTTGATTTCACAGATACCAGT
TATTGACATGCAAAGCTTACATTCTGAAGAATCAATGGATTCTGAGTTAG
CCAAGCTCGACTTCGTATGCAAAGAATGGGGTTTTTTCCAGCTGGTAAAT
CATGGAATGAGCACAGCATTTCTAGAGAAATTAAAGAAAGAGGTTGAGGG
ATTCTTCAATCTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCGTCCAG
GAGATATGGAAGGATTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAAG
CTTGATTGGGCTGACCTTTTCTCCATGATGACTCTTCCAGTTCATCTGAG
GAAACCACATTTATTTCCTAAGCTCCCTCCTTCCCTCAGAGAGACCTTGG
AAGTTTACTCAATGGAATTAAAAACCCTAGCCGAGAACCTAATATCGAAA
ATGGGAGAAGTGTTAAATATCAAAGATGAAGAAATGAGAGAATTCTTTGA
AAATGGACTGCAAGGAATGAGGATGAATTATTACCCTCCATGTCCTCAGC
CCGAGAAGGTTATGGGCCTGTCGCCGCATTCTGATGCGGCTGCACTTACC
ATTCTGCTACAACT
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