CX043833

Overview
NameCX043833
Unique NameCX043833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX043833 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:  556 QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTAT 804
            Q+  +  NV+VA DG+G+Y+TVSEA++AA   S  R+VI +KAGVY+E +     K  I  +GDG+ +TIIT   N + G++   +AT
Sbjct:    1 QSSTVTPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSAT 88
[Close]
BLAST of CX043833 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:  556 QAPRINANVIVAQDGTGNYRTVSEAISAASGN---RFVIYVKAGVYKEKIR--TNKDGITLIGDGKYTTIITGDDNARRGTSMPGTAT 804
            QA +  A++IVA+DG+GN+ TV+EA++AA  N    FVIY+K G+YKE IR    K  +TL+GDG+  T+++GD N   G     +AT
Sbjct:   38 QALKDKADLIVAKDGSGNFTTVNEAVAAAPENGVKPFVIYIKEGLYKEVIRIGKKKTNLTLVGDGRDLTVLSGDLNGVDGIKTFDSAT 125
The following BLAST results are available for this feature:
BLAST of CX043833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PME_DAUCA1.946e-1244.32Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME56_ARATH2.542e-1246.59Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13G01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13G01-N1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043833 ID=CX043833; Name=CX043833; organism=Citrus sinensis; type=EST; length=804bp
AGCTTCACTAGATTCCCAATCCTTTGTGTCCAGACATTGATGGGGTTTGA
GAGTACAAAACATCAACAACACATCCATCTTATGTCTGCTCTCGTTAACA
AAAGCATTGCTGAAACCAAGCTGCCTACTTCATATTTTTCTAATTTCAGC
TCCCAGTTACTTGCCAAAGATTTCCAAGGTGTACGTGCTGTCACAGATCA
CTGCGAAGAGATGATGAGTATGTCACTCAAACGGCTAGAGAAGTCACTAT
TAGCCCTACAAAATTCCCCAACAAAAAACAAGCATGACATCCAAACGTGG
CTCGGCGCTGCGTTGACTTTCCAGCAAACTTGTAAAGACTCTGTGAATAG
CCTCGGTCTCTCAGCGAGAAATGAGGTTATCAAAAAAATATCTCAAAAAA
TGGATTATTTGTCTCAACTGACCAGTAATCCTTTAGCCCTTGTCAACAGG
ATAGACAGGGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTAGA
TGAGGAACAAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAAAC
TGCTGCAGGCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATGGA
ACTGGCAATTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGAAA
TCGTTTTGTGATTTATGTGAAGGCAGGTGTTTATAAGGAGAAAATTCGAA
CTAACAAGGACGGTATTACTTTGATAGGAGATGGCAAATACACTACTATT
ATTACTGGTGATGATAATGCTCGTAGAGGCACTTCCATGCCTGGCACCGC
CACT
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